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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-12 02:31:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Citrus unshiu mRNA, clone: MAPGR01, 5' end, expressed in albedo.
AU300719.1:162-181
CTTCGCCGGCAAGCAGCTGGNGGACGGCCG162CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
Cri2_1_H16_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_1_H16 5', mRNA sequence.
BE640834.1:210-229
CTTTGCTGGCAAACAGCTTGAAGATGGACG210CACCCTGGCCGATTATAACATCCAGAAGGAGTCCACTCTCCATCTTGTGC
Cri2_2_B15_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_2_B15 5', mRNA sequence.
BE641037.1:218-237
CTTTGCTGGCAAACAGCTTGAAGATGGACG218CACCCTGGCCGATTATAACATCCAGAAGGAGTCCACTCTCCATCTTGTGC
Cri2_4_O18_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_4_O18 5', mRNA sequence.
BE642022.1:223-242
CTTTGCTGGCAAACAGCTTGAAGATGGACG223CACCCTGGCCGATTATAACATCCAGAAGGAGTCCACTCTCCATCTTGTGC
Cri2_5_G01_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_5_G01 5', mRNA sequence.
BE642185.1:202-221
CTTTGCTGGCAAACAGCTTGAAGATGGACG202CACCCTGGCCGATTATAACATCCAGAAGGAGTCCACTCTCCATCTTGTGC
Cri2_5_J03_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_5_J03 5', mRNA sequence.
BE642245.1:212-231
CTTTGCTGGCAAACAGCTTGAAGATGGACG212CACCCTGGCCGATTATAACATCCAGAAGGAGTCCACTCTCCATCTTGTGC
Cri2_6_B04_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_6_B04 5', mRNA sequence.
BE642446.1:232-251
CTTTGCTGGCAAACAGCTTGAAGATGGACG232CACCCTGGCCGATTATAACATCCAGAAGGAGTCCACTCTCCATCTTGTGC
Cri2_6_O03_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_6_O03 5', mRNA sequence.
BE642741.1:221-240
CTTTGCTGGCAAACAGCTTGAAGATGGACG221CACCCTGGCCGATTATAACATCCAGAAGGAGTCCACTCTCCATCTTGTGC
Cri2_7_J07_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_7_J07 5', mRNA sequence.
BE642987.1:220-239
CTTTGCTGGCAAACAGCTTGAAGATGGACG220CACCCTGGCCGATTATAACATCCAGAAGGAGTCCACTCTCCATCTTGTGC
Cri2_8_E19_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_8_E19 5', mRNA sequence.
BE643246.1:204-223
CTTTGCTGGCAAACAGCTTGAAGATGGACG204CACCCTGGCCGATTATAACATCCAGAAGGAGTCCACTCTCCATCTTGTGC
Cri2_8_F04_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_8_F04 5', mRNA sequence.
BE643255.1:212-231
CTTTGCTGGCAAACAGCTTGAAGATGGACG212CACCCTGGCCGATTATAACATCCAGAAGGAGTCCACTCTCCATCTTGTGC
Cri_9_P15_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri_9_P15 5', mRNA sequence.
BQ087114.1:221-240
CTTTGCTGGCAAACAGCTTGAAGATGGACG221CACCCTGGCCGATTATAACATCCAGAAGGAGTCCACTCTCCATCTTGTGC
Cri_10_A19_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri_10_A19 5', mRNA sequence.
BQ087123.1:249-268
CTTTGCTGGCAAACAGCTTGAAGATGGACG249CACCCTGGCCGATTATAACATCCAGAAGGAGTCCACTCTCCATCTTGTGC
USDA-FP_01621 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01621 5', mRNA sequence.
BQ624530.1:270-289
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG270CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
USDA-FP_02013 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_02013 5', mRNA sequence.
BQ624922.1:24-43
GGCAAGCAGCTGGAGGACGGCCG24CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
USDA-FP_02289 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_02289 5', mRNA sequence.
BQ625198.1:44-63
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG44CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCCTCCACCTTGTG
UCRCS01_01ag02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ag02, mRNA sequence.
CB290312.1:450-469
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG450CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCS01_01ca07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca07, mRNA sequence.
CB290524.1:214-233
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG214CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCS01_01dg07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dg07, mRNA sequence.
CB290825.1:444-463
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG444CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCS01_01dg10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dg10, mRNA sequence.
CB290831.1:417-436
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG417CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCS01_02de09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02de09, mRNA sequence.
CB291418.1:440-459
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG440CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCS01_02de09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02de09, mRNA sequence.
CB291418.1:668-687
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG668CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCS01_03be10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_03be10, mRNA sequence.
CB291733.1:449-468
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG449CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCS01_03ch03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_03ch03, mRNA sequence.
CB291948.1:366-385
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG366CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCS01_03dh03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_03dh03, mRNA sequence.
CB292101.1:454-473
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG454CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCS01_04ag01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04ag01, mRNA sequence.
CB292231.1:449-468
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG449CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCS01_05ch06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ch06, mRNA sequence.
CB293196.1:460-479
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG460CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCS01_06ac08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac08, mRNA sequence.
CB293411.1:464-483
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG464CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCS01_06af01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06af01, mRNA sequence.
CB293463.1:438-457
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG438CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
USDA-FP_115000-861 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_G06 5', mRNA sequence.
CF417931.1:448-467
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG448CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
USDA-FP_116000-383 Immature Ovaries from field collected Flying Dragon Trifoliate Orange Citrus trifoliata cDNA clone TFF-1T3_C11 5', mRNA sequence.
CF418450.1:249-268
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG249CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
USDA-FP_116000-796 Immature Ovaries from field collected Flying Dragon Trifoliate Orange Citrus trifoliata cDNA clone TFF-29_A11 5', mRNA sequence.
CF418859.1:248-267
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG248CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
USDA-FP_117000-355 Immature Ovaries from field collected Flying Dragon Trifoliate Orange Citrus trifoliata cDNA clone TFF-20_D10 5', mRNA sequence.
CF419414.1:442-461
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG442CACCCTGGCCGATTATAACATCCAGAANGAATCCACGCTCCACCTTGTGT
USDA-FP_117000-661 Immature Ovaries from field collected Flying Dragon Trifoliate Orange Citrus trifoliata cDNA clone TFF-13_H06 5', mRNA sequence.
CF419720.1:88-107
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG88CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
USDA-FP_118000-291 Immature Ovaries from field collected Flying Dragon Trifoliate Orange Citrus trifoliata cDNA clone TFF-34_F02 5', mRNA sequence.
CF420348.1:218-237
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG218CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
USDA-FP_118000-735 Immature Ovaries from field collected Flying Dragon Trifoliate Orange Citrus trifoliata cDNA clone TFF-34_F05 5', mRNA sequence.
CF420733.1:218-237
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG218CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
USDA-FP_122000-754 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-55_E06 5', mRNA sequence.
CF507253.1:58-77
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG58CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
USDA-FP_124000-558 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-73_H10 5', mRNA sequence.
CF509053.1:453-472
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG453CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
USDA-FP_125000-208 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_D04 5', mRNA sequence.
CF509700.1:427-446
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG427CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
USDA-FP_125000-514 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_H07 5', mRNA sequence.
CF509999.1:315-334
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG315CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
USDA-FP_003381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE07G08 5', mRNA sequence.
CF653497.1:52-71
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG52CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCR01_01A12_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01A12, mRNA sequence.
CF828081.1:462-481
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG462CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCR01_04K14_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa04K14, mRNA sequence.
CF830333.1:287-306
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG287CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCR01_04L13_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa04L13, mRNA sequence.
CF830368.1:304-323
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG304CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCR01_05C09_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa05C09, mRNA sequence.
CF830651.1:462-481
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG462CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCR01_05C12_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa05C12, mRNA sequence.
CF830654.1:105-124
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG105CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCR01_05D02_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa05D02, mRNA sequence.
CF830678.1:462-481
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG462CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCS02_01K13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01K13, mRNA sequence.
CF832309.1:305-324
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG305CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCS02_02H16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02H16, mRNA sequence.
CF832812.1:473-492
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG473CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT
UCRCS02_03G15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03G15, mRNA sequence.
CF833313.1:472-491
CTTCGCCGGCAAGCAGCTGGAGGACGGCCG472CACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACCCTGGCCGATTATAACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCCTGGCCGATTATAACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.985 | 0.976 | search_plus_done; http://172.18.8.135:50400/match?q=CACCCTGGCCGATTATAACA&k=0&no_gap=0&offset=0&limit=50
1.037 | 0.052 | search_minus_done; http://172.18.8.135:50400/match?q=TGTTATAATCGGCCAGGGTG&k=0&no_gap=0&offset=0&limit=0
1.037 | 0.000 | cgi_end;

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