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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:29:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RCRA673TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRA673, mRNA sequence.
EG666972.1:59-80
ATTCCCACTTCGAAAACCACCCTCCTCCTC59CACCTCCACAAGATGAATCTCAAATCCTCGATTCCCAAAACCTAGACAGAAC
RCRCF57TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRCF57, mRNA sequence.
EG669952.1:184-205
ATTCCCACTTCGAAAACCACCCTCCTCCTC184CACCTCCACAAGATGAATCTCAAATCCTCGATTCCCAAAACCTAGACAGAAC
RCRCI49TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRCI49, mRNA sequence.
EG670470.1:139-160
ATTCCCACTTCGAAAACCACCCTCCTCCTC139CACCTCCACAAGATGAATCTCAAATCCTCGATTCCCAAAACCTAGACAGAAC
RCRCN15TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRCN15, mRNA sequence.
EG671264.1:130-151
ATTCCCACTTCGAAAACCACCCTCCTCCTC130CACCTCCACAAGATGAATCTCAAATCCTCGATTCCCAAAACCTAGACAGAAC
RCRCW38TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRCW38, mRNA sequence.
EG672870.1:132-153
ATTCCCACTTCGAAAACCACCCTCCTCCTC132CACCTCCACAAGATGAATCTCAAATCCTCGATTCCCAAAACCTAGACAGAAC
RCRCX57TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRCX57, mRNA sequence.
EG673058.1:139-160
ATTCCCACTTCGAAAACCACCCTCCTCCTC139CACCTCCACAAGATGAATCTCAAATCCTCGATTCCCAAAACCTAGACAGAAC
RCRDO07TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRDO07, mRNA sequence.
EG677701.1:131-152
ATTCCCACTTCGAAAACCACCCTCCTCCTC131CACCTCCACAAGATGAATCTCAAATCCTCGATTCCCAAAACCTAGACAGAAC
RCRDT38TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRDT38, mRNA sequence.
EG678602.1:91-112
ATTCCCACTTCGAAAACCACCCTCCTCCTC91CACCTCCACAAGATGAATCTCAAATCCTCGATTCCCAAAACCTAGACAGAAC
RCRE353TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRE353, mRNA sequence.
EG680478.1:115-136
ATTCCCACTTCGAAAACCACCCTCCTCCTC115CACCTCCACAAGATGAATCTCAAATCCTCGATTCCCAAAACCTAGACAGAAC
RCRE749TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRE749, mRNA sequence.
EG681228.1:144-165
ATTCCCACTTCGAAAACCACCCTCCTCCTC144CACCTCCACAAGATGAATCTCAAATCCTCGATTCCCAAAACCTAGACAGAAC
RCRAF95TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRAF95, mRNA sequence.
EG682132.1:108-129
ATTCCCACTTCGAAAACCACCCTCCTCCTC108CACCTCCACAAGATGAATCTCAAATCCTCGATTCCCAAAACCTAGACAGAAC
RCRAK70TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRAK70, mRNA sequence.
EG682908.1:232-253
ATTCCCACTTCGAAAACCACCCTCCTCCTC232CACCTCCACAAGATGAATCTCAAATCCTCGATTCCCAAAACCTAGACAGAAC
RCSAG14TP Castor bean cDNA library from seeds (12-33 days after pollination), 1.4 kb Ricinus communis cDNA clone RCSAG14, mRNA sequence.
EG691223.1:133-154
ATTCCCACTTCGAAAACCACCCTCCTCCTC133CACCTCCACAAGATGAATCTCAAATCCTCGATTCCCAAAACCTAGACAGAAC
RCSB017TP Castor bean cDNA library from seeds (12-33 days after pollination), 1.4 kb Ricinus communis cDNA clone RCSB017, mRNA sequence.
EG693129.1:138-159
ATTCCCACTTCGAAAACCACCCTCCTCCTC138CACCTCCACAAGATGAATCTCAAATCCTCGATTCCCAAAACCTAGACAGAAC
Endomychus coccineus genome assembly, chromosome: 3.
OY294069.1:127221584-127221605
ATGCTAACAGGGTACAGATCGTTTAATTAC127221584CACCTCCACAAGATGAATCTCAGCGATTCAGCTTTGTGCAGGTGGTGCAAAC
Syritta pipiens genome assembly, chromosome: 1.
LR994571.1:52108080-52108101
GGCCACATTATCCGTAGATTTCCCTGCTGA52108080TGAGATTCATCTTGTGGAGGTGGTTCATGTCCTATAAGTGCTTCGCGTAATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACCTCCACAAGATGAATCTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCTCCACAAGATGAATCTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.158 | 1.149 | search_plus_done; http://172.18.8.135:50400/match?q=CACCTCCACAAGATGAATCTCA&k=0&no_gap=0&offset=0&limit=50
1.190 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=TGAGATTCATCTTGTGGAGGTG&k=0&no_gap=0&offset=0&limit=35
1.191 | 0.001 | cgi_end;

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