GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 07:53:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sciurus vulgaris genome assembly, chromosome: 11.
LR738622.1:121339397-121339416
TTTTTCAAGTGTGGTTTCTTAATCCCAGGC121339397CACCTCTTCCTTTCTTCCCCTTCTTGATATCCTCAGAAGAGATGGACCAG
Acomys russatus genome assembly, chromosome: 9.
LR877220.1:27139499-27139518
GTGATTATTTTAATTAAGATTGAATTTTAT27139499CACCTCTTCCTTTCTTCCCCCTAACCCCTTCCATTTATCTTCCATTGAAC
Lutra lutra genome assembly, chromosome: 8.
LR738410.1:54642065-54642084
CTGAGATGAAAAGGTTTGGGCTTATCATTG54642065CACCTCTTCCTTTCTTCCCCGTTCCTGCTGCTGCTGTCTTTTGGGGAGGA
Pollachius pollachius genome assembly, chromosome: 20.
OX465143.1:4231603-4231622
TCCCCTCCCCCTCTTGACACACTGAATAAC4231603CACCTCTTCCTTTCTTCCCCTCATACAGAGAAGGTTGTTCATATGCCGCG
Borostomias antarcticus genome assembly, chromosome: 5.
OX465208.1:21507732-21507751
TGGGGTGGTGATCCTGTCACTTAAAAACCC21507732CACCTCTTCCTTTCTTCCCCCCTGGGCAGCCATTACGATTGGCCGGCTGG
Xyrichtys novacula genome assembly, chromosome: 4.
OY660867.1:17032862-17032881
TCTGACCAGTCCTCCAAAGACTGTAATCAA17032862CACCTCTTCCTTTCTTCCCCTCCCAAGAGTGGACTCCAGAGCATTATCTT
Fringilla coelebs genome assembly, chromosome: 7.
OY740731.1:9375568-9375587
AAAGGGTGAGAGGCTCAGGCAAAGCTTCTG9375568CACCTCTTCCTTTCTTCCCCGTACACGCTCTCTTGCCACCTTTCTTAATC
Raja brachyura genome assembly, chromosome: 1.
OY740781.1:33451389-33451408
ATTCTCAGCTCTCCCACAGCCCTCTGGCTC33451389CACCTCTTCCTTTCTTCCCCCCCCCCACCCCCCACATCAGTCTGAAGAAG
Raja brachyura genome assembly, chromosome: 1.
OY740781.1:95174924-95174943
CTTCCCAGCTCTCCCACAGCCCACTGTCTC95174924CACCTCTTCCTTTCTTCCCCCCCCCCACCCCCCCACACCTGCACATCGGT
Raja brachyura genome assembly, chromosome: 1.
OY740781.1:101325253-101325272
TTCCCAGCTCTCCCAGAAGCCTACTGTCTC101325253CACCTCTTCCTTTCTTCCCCCTCCCTCCCCACCCCGACATCAGTGTGAAG
Raja brachyura genome assembly, chromosome: 2.
OY740782.1:9358571-9358590
TTCCCAGCTCTCCCACAAGCCTACTGTCTC9358571CACCTCTTCCTTTCTTCCCCCCCCACCCCCGGACATCAGTCTGAAGAAGG
Raja brachyura genome assembly, chromosome: 2.
OY740782.1:13267206-13267225
CTTCCCAGCTCTCCCACAGCCTACTGTCTC13267206CACCTCTTCCTTTCTTCCCCCCCCCCCCCAACCCCCATATCAGTCTGAAG
Raja brachyura genome assembly, chromosome: 2.
OY740782.1:100413603-100413622
CTTCACAGCTCTCCCTCAGCCCACTGGCTC100413603CACCTCTTCCTTTCTTCCCCCCCCCCCCCCCAACCCTCACATCAGTCAGA
Raja brachyura genome assembly, chromosome: 3.
OY740783.1:107426726-107426745
TTCCCAGCTCTCCCACAAGCCTGCTGTCTC107426726CACCTCTTCCTTTCTTCCCCCCCTCCAACATCAGTCTGAAGAAGGGTCTT
Raja brachyura genome assembly, chromosome: 5.
OY740785.1:79642234-79642253
GTTCTCAGCTCTCCCACAGCCCACTGTCGT79642234CACCTCTTCCTTTCTTCCCCCCCCCCCCCAGCATCAGTCTGAAGAAGGGT
Raja brachyura genome assembly, chromosome: 6.
OY740786.1:88615941-88615960
CTTCTCAGCTCTCCCTCAGCCCTCTGGCTC88615941CACCTCTTCCTTTCTTCCCCCAGCCCCCCACCCCCCACCTTCACATTAGT
Raja brachyura genome assembly, chromosome: 8.
OY740788.1:2126524-2126543
TTCCCAGCTCTCCCACAAGCCTACTGTCTC2126524CACCTCTTCCTTTCTTCCCCCCACCCCGCCCCGACATCAGTCTGATGAAG
Raja brachyura genome assembly, chromosome: 8.
OY740788.1:69451274-69451293
CTTCTCAGCTCTCCCTCAGCGCTCTGGCTC69451274CACCTCTTCCTTTCTTCCCCCCACACCCTCACATCAGTATGAAGAAGGGT
Raja brachyura genome assembly, chromosome: 8.
OY740788.1:76102861-76102880
TCTTCTCCAATTTCAGGTGGTCTTGCTTTC76102861CACCTCTTCCTTTCTTCCCCCCACCCCCCCCCCCACATCAGTCTGAAGAA
Raja brachyura genome assembly, chromosome: 10.
OY740790.1:70289062-70289081
CCCATCCCAGCATCCCAAGCCTACTGCCTC70289062CACCTCTTCCTTTCTTCCCCCCCACCCGACATCAGTCTGAGGATGGGTCT
Raja brachyura genome assembly, chromosome: 11.
OY740791.1:40974587-40974606
CTTCCCAGCTCTCCCACAGCCTACTGTCTC40974587CACCTCTTCCTTTCTTCCCCCCCCCCCACCCCACCCCCACACCTCCACAT
Raja brachyura genome assembly, chromosome: 13.
OY740793.1:43356666-43356685
TTCCCAGCTCTCCCACAAGCCCACTGTCTC43356666CACCTCTTCCTTTCTTCCCCCCCCCACGACAGTCTGAAGTAGGGTCTCGA
Raja brachyura genome assembly, chromosome: 17.
OY740797.1:339532-339551
TCCCAGCTCTCCTTCTAATCCTACTGTCTC339532CACCTCTTCCTTTCTTCCCCCCCCCCCCCCACATCAGTCTGAAGAAGAGT
Raja brachyura genome assembly, chromosome: 17.
OY740797.1:52265318-52265337
CTTTTCAGCTCTCCCTCAGCCCACTGGCTT52265318CACCTCTTCCTTTCTTCCCCCGCCCCCCCCCCCCCAACCCTCACATCAGT
Raja brachyura genome assembly, chromosome: 18.
OY740798.1:42110339-42110358
CTTCTCAACTCTCCCTCAGCCCTCTGGCTC42110339CACCTCTTCCTTTCTTCCCCCCCCCACCCCCACCCTCACATCAGTCTGAA
Raja brachyura genome assembly, chromosome: 18.
OY740798.1:42319881-42319900
CTTCTCAACTCTCCCTCAGCCCTCTGGCTC42319881CACCTCTTCCTTTCTTCCCCCCCCCACCCTCACATCAGTCTGAATAAGGA
Raja brachyura genome assembly, chromosome: 21.
OY740801.1:9090336-9090355
CTTCTCAGCTCTCCCTCAGCCCACTGGCTC9090336CACCTCTTCCTTTCTTCCCCCCCCACCCCCACCTGCGCATCAGTCTGAAG
Raja brachyura genome assembly, chromosome: 26.
OY740806.1:11388910-11388929
CTTCCCAGCTCTCCCACGGACCACTGTCGC11388910CACCTCTTCCTTTCTTCCCCAACTAATTCAGATGAAACACCAAGGCATTG
Raja brachyura genome assembly, chromosome: 26.
OY740806.1:26604640-26604659
CTTCTCAGCTCTCCCTCAGCCCCCAGTCTC26604640CACCTCTTCCTTTCTTCCCCCCCCCCCCCCGACCCTCACATCAGTCTGAA
Raja brachyura genome assembly, chromosome: 27.
OY740807.1:22672977-22672996
ATTCTCAGATCTCCCTCAGCCCCCTGGCTC22672977CACCTCTTCCTTTCTTCCCCCCCCCCCCCCCCATCCCCCCCACCCTCACA
Raja brachyura genome assembly, chromosome: 27.
OY740807.1:22683589-22683608
ATTCTCAGATCTCCCTCAGCCCCCTGGCTC22683589CACCTCTTCCTTTCTTCCCCCCCCCCCCCCCATCCCCCCCACCCTCACAT
Raja brachyura genome assembly, chromosome: 27.
OY740807.1:31963985-31964004
CTCCTCAGCTCTCCCTCAGCCCTCTGGCAC31963985CACCTCTTCCTTTCTTCCCCACCCTCACATCAGCCTGAAGAAGGGTCTCG
Raja brachyura genome assembly, chromosome: 28.
OY740808.1:2068069-2068088
TCCCAGCTCTCCCACAAAGCCTACTGTCTC2068069CACCTCTTCCTTTCTTCCCCCACCGACATCAGTCTGAAGAAGGGTCTCGA
Raja brachyura genome assembly, chromosome: 30.
OY740810.1:4852004-4852023
ATTTTAACAACCACCAGTCCATACTATCTC4852004CACCTCTTCCTTTCTTCCCCCCCCCCCGACATCAGCCTGAAGAAGGGTCG
Raja brachyura genome assembly, chromosome: 30.
OY740810.1:6183058-6183077
CTTCTCAGCTCTCCCTCTTCCCACTGGCTC6183058CACCTCTTCCTTTCTTCCCCCCCCCCCCCCCCCACCCTCACATTAGTCTG
Raja brachyura genome assembly, chromosome: 30.
OY740810.1:35677491-35677510
CACCGAAGATACTAGAGTATCTTTGGTCTC35677491CACCTCTTCCTTTCTTCCCCCACCTTCACATCAGTCTGAAGAATGGTTTC
Raja brachyura genome assembly, chromosome: 34.
OY740814.1:17573230-17573249
CTTCTCAGCTCTCCCTCAGCCCTCTGGCTC17573230CACCTCTTCCTTTCTTCCCCCCGCCCCCCCACCCTCACATCAGTCTGAAG
Raja brachyura genome assembly, chromosome: 36.
OY740816.1:14390169-14390188
CTTCTCAGCCCTCCCTCAGCCCACTGGCTC14390169CACCTCTTCCTTTCTTCCCCCCTCCCCCACCCTCACATCAGTCTGAAGAA
OA_BBa0012C11.r OA_BBa Oryza alta genomic clone OA_BBa0012C11 3', genomic survey sequence.
CZ123698.1:618-637
GATGACGAGGCAGGCCTTAACCGTCGCTGC618CACCTCTTCCTTTCTTCCCCGTTCTTGACCTTGGCAGGCGACAACACT
Rattus norvegicus clone CH230-14N8, WORKING DRAFT SEQUENCE, 16 unordered pieces.
AC096091.6:104674-104693
CTCCTCTTTTCTCTTTTATTTTCCTTTTCC104674CACCTCTTCCTTTCTTCCCCCTTTTAAAAATTAATTAATCAATTAATTTA
Rattus norvegicus clone CH230-29D7, WORKING DRAFT SEQUENCE, 2 ordered pieces.
AC099279.10:216620-216639
CTCCTCTTTTCTCTTTTATTTTCCTTTTCC216620CACCTCTTCCTTTCTTCCCCCTTTTAAAAATTAATTAATCAATTAATTTA
Lotus japonicus genomic DNA, chromosome 1, clone: LjT45D03, TM0375b.
AP006681.1:60853-60872
TTGCAGCACCACCACCCGCAGCCCATCCTC60853CACCTCTTCCTTTCTTCCCCTCTTTTTTAGCTTAGATCTATAGCACCAGC
Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:128303384-128303403
TTGCAGCACCACCACCCGCAGCCCATCCTC128303384CACCTCTTCCTTTCTTCCCCTCTTTTTTAGCTTAGATCTATAGCACCAGC
Gossypioides kirkii chromosome KI_06.
CP032248.1:7031516-7031535
GTGAAGGTTGATGGTGTACTCTCTGGTCAC7031516CACCTCTTCCTTTCTTCCCCTTGTTTTCTCAACCATTTTCACTCCCTCTT
Gossypioides kirkii chromosome KI_08.
CP032250.1:38956078-38956097
GTGAAGGTTGATTGTGTATTCTCTGGTCAC38956078CACCTCTTCCTTTCTTCCCCTTGTTTTCTCAACCATTTCAAAATCTTTCT
Gossypium raimondii isolate D5-4 chromosome D5_08.
CP032560.1:60999737-60999756
GTGAAGGTTGATGGTGTATTCTCTGGTCAC60999737CACCTCTTCCTTTCTTCCCCTTGTTTTCTCAACCATTTTGAAATCTTTCT
Gossypium herbaceum isolate Zhongcao1 chromosome 8.
CP106683.1:137166954-137166973
GTGAAGGTTGACGGTGTATTCTCTGGTCAC137166954CACCTCTTCCTTTCTTCCCCTTGTTTTCTCAACCATTTTAAAATCTTTCT
Gossypium bickii isolate GPG1lz chromosome 8.
CP106712.1:134753200-134753219
GTGAAGGTTGATGGTGTATTCTCTGGTCAC134753200CACCTCTTCCTTTCTTCCCCTTGTTTTCTCAACCATTTTAAAATCTTTCT
Sorghum bicolor cultivar Hongyingzi chromosome 1.
CP137825.1:51345071-51345090
AACAATCACGATAACAACTTCTCATCAATT51345071CACCTCTTCCTTTCTTCCCCTTTTCCACCTTACAGCGATCCCCGCCGTTA
Sorghum bicolor cultivar Huandiaonuo chromosome 1.
CP137835.1:55485562-55485581
AACAATCACGATAACAACTTCTCATCAATT55485562CACCTCTTCCTTTCTTCCCCTTTTCCACCTTACAGCGATCCCCGCCGTTA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 3H.
OX638772.1:544140910-544140929
CCTGCCGCCGCCATCTCCTTCCTCCCCCTC544140910CACCTCTTCCTTTCTTCCCCAGGTAAACTTTCTGTAGGGATAGCAGAGAG
Hibiscus tridactylites genome assembly, chromosome: 13.
OY288277.1:1013897-1013916
GTGAAGGTTGATGGTGTACTCTCTGGTCAC1013897CACCTCTTCCTTTCTTCCCCTTGTTTTCTCAACCATTTTCACCGCCTCGA
Hordeum bulbosum genome assembly, chromosome: 7H_1.
OY737466.1:118077147-118077166
CGGTAAGCCCTCCATTCGGGCTCCTCCCAC118077147CACCTCTTCCTTTCTTCCCCTGCTCCGGTCCCGTTCCGACGCCCCGCACC
Hordeum bulbosum genome assembly, chromosome: 7H_4.
OY737487.1:117268200-117268219
CGGTAAGCCCTCCATTCGGGCTCCTCCCAC117268200CACCTCTTCCTTTCTTCCCCTGCTCCGGTCCCGTTCCGACGCCCCGCACC
Malachius bipustulatus genome assembly, chromosome: 1.
OU342630.1:78485198-78485217
TAAATCTTAATACCTAATTATAGAATAGAT78485198CACCTCTTCCTTTCTTCCCCTCCCCCTTTTCCCCATTGCTTCACCTCACC
Andrena bucephala genome assembly, chromosome: 1.
OX387715.1:108202003-108202022
TCTCGAATCGAAATTGATCCCCCCCAGTCA108202003CACCTCTTCCTTTCTTCCCCCAATGTCGCGCGATGAAAACAAAAAGAAGA
Andrena trimmerana genome assembly, chromosome: 1.
OX578059.1:23193266-23193285
GAATCGAAATTGATCCCCCCCCCCCAGTCA23193266CACCTCTTCCTTTCTTCCCCCAATGTCGCGCGATGAAAACAAAAAGAAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACCTCTTCCTTTCTTCCCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCTCTTCCTTTCTTCCCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.300 | 0.291 | search_plus_done; http://172.18.8.135:50400/match?q=CACCTCTTCCTTTCTTCCCC&k=0&no_gap=0&offset=0&limit=50
0.366 | 0.066 | search_minus_done; http://172.18.8.135:50400/match?q=GGGGAAGAAAGGAAGAGGTG&k=0&no_gap=0&offset=0&limit=0
0.366 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).