GGGenome | Results

Help | Japanese

2025-04-16 23:08:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_22000.
FX695607.1:384-404

ACTCTTCATTGATCACACATGCCGCTGCAG384CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_9489.
FX731655.1:418-438

ACTCTTCATTGATCACACATGCCGCTGCAG418CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC

Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:14473802-14473822

ACTCTTCATTGATCACACATGCCGCTGCAG14473802CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC

Brassica napus genome assembly, chromosome: A04.
HG994358.1:8895771-8895791

ACTCTTCATTGATCACACATGCCGCTGCAG8895771CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC

Brassica rapa genome, scaffold: A04.
LR031576.1:8153638-8153658

ACTCTTCATTGATCACACATGCCGCTGCAG8153638CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC

Brassica rapa genome assembly, chromosome: A04.
LS974620.2:8399312-8399332

ACTCTTCATTGATCACACATGCCGCTGCAG8399312CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC

BR057266 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-005D05 5', mRNA sequence.
EX072622.1:376-396

GATTGAGATGTACAAGAAAAAACTCGGTTT376ACATGGAGCTGATGATCCGTGCTGCAGCGGCATGTGTGATCAATGAAGAGT

BR058000 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-014F12 5', mRNA sequence.
EX073356.1:120-140

GATTGAGATGTACAAGAAAAAACTCGGTTT120ACATGGAGCTGATGATCCGTGCTGCAGCGGCATGTGTGATCAATGAAGAGT

Brassica rapa subsp. pekinensis male sterility linked AFLP marker P01SCR01 genomic sequence.
FJ851467.1:235-255

GATTGAGATGTACAAGAAAAAACTCGGTTT235ACATGGAGCTGATGATCCGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.126 | 0.117 | search_plus_done; http://172.18.8.135:50400/match?q=CACGGATCATCAGCTCCATGT&k=0&no_gap=0&offset=0&limit=50
0.264 | 0.138 | search_minus_done; http://172.18.8.135:50400/match?q=ACATGGAGCTGATGATCCGTG&k=0&no_gap=0&offset=0&limit=44
0.266 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).