GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 16:05:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

LJGB287TF JCVI-LJ1 Lotus japonicus cDNA 5', mRNA sequence.
GO005526.1:122-141
TTCATCAAATTCTCATTTCAATTTTCACTT122CACTAAGCGAAAATGGAAGGTGGAAGAGCAATTGCGATGATGAAGCTAGC
LJGBG86TF JCVI-LJ1 Lotus japonicus cDNA 5', mRNA sequence.
GO008113.1:117-136
TTCATCAAATTCTCATTTCAATTTTCACTT117CACTAAGCGAAAATGGAAGGTGGAAGAGCAATTGCGATGATGAAGCTAGC
LJGBH72TF JCVI-LJ1 Lotus japonicus cDNA 5', mRNA sequence.
GO008296.1:122-141
TTCATCAAATTCTCATTTCAATTTTCACTT122CACTAAGCGAAAATGGAAGGTGGAAGAGCAATTGCGATGATGAAGCTAGC
Lotus japonicus cDNA, clone:MR020a10_f, 3' end.
BP077488.1:311-330
GCTAGCTTCATCATCGCAATTGCTCTTCCA311CCTTCCATTTTCGCTTAGTGAAGTGAAAATTGAAATGAGAATTTGATGAA
LJGBG86TO JCVI-LJ1 Lotus japonicus cDNA 3', mRNA sequence.
GO017691.1:285-304
GCTAGCTTCATCATCGCAATTGCTCTTCCA285CCTTCCATTTTCGCTTAGTGAAGTGAAAATTGAAATGAGAATTTGATGAA
LJGBH72TO JCVI-LJ1 Lotus japonicus cDNA 3', mRNA sequence.
GO017758.1:273-292
GCTAGCTTCATCATCGCAATTGCTCTTCCA273CCTTCCATTTTCGCTTAGTGAAGTGAAAATTGAAATGAGAATTTGATGAA
LJNBB96TO JCVI-LJ3 Lotus japonicus cDNA 3', mRNA sequence.
GO041261.1:291-310
GCTAGCTTCATCATCGCAATTGCTCTTCCA291CCTTCCATTTTCGCTTAGTGAAGTGAAAATTGAAATGAGAATTTGATGAA
Lotus japonicus genomic DNA, chromosome 4, clone: LjT47B07, TM0832.
AP007623.2:62686-62705
GCTAGCTTCATCATCGCAATTGCTCTTCCA62686CCTTCCATTTTCGCTTAGTGAAGTGAAAATTGAAATGAGAATTTGATGAA
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:6163026-6163045
GCTAGCTTCATCATCGCAATTGCTCTTCCA6163026CCTTCCATTTTCGCTTAGTGAAGTGAAAATTGAAATGAGAATTTGATGAA
Mya arenaria isolate MELC-2E11 chromosome 6.
CP111017.1:2604886-2604905
CTGGTCTAGCATATGACTCTCCATATAAAT2604886CCTTCCATTTTCGCTTAGTGACTCGATCGCCGTTGCTCAGCGTTGAACCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACTAAGCGAAAATGGAAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACTAAGCGAAAATGGAAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.411 | 0.402 | search_plus_done; http://172.18.8.135:50400/match?q=CACTAAGCGAAAATGGAAGG&k=0&no_gap=0&offset=0&limit=50
0.722 | 0.311 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTCCATTTTCGCTTAGTG&k=0&no_gap=0&offset=0&limit=47
0.726 | 0.005 | cgi_end;

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