GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 15:37:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST0370 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_22_87.M13+_G11.ab1, mRNA sequence.
FE861511.1:51-72
GATTGCTTCGGCAGAGGTTGAAGCGGCTCT51CACTACTCACCTCCTCGCACCTCTCATCTTCAGGTCTCTCTCTCTCTCTTGG
EST0372 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_07_14.M13+_F02.ab1, mRNA sequence.
FE861513.1:51-72
GATTGCTTCGGCAGAGGTTGAAGCGGCTCT51CACTACTCACCTCCTCGCACCTCTCATCTTCAGAAAACGGAGCAACAATGGC
EST0373 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_10_16.M13+_H02.ab1, mRNA sequence.
FE861514.1:51-72
GATTGCTTCGGCAGAGGTTGAAGCGGCTCT51CACTACTCACCTCCTCGCACCTCTCATCTTCAGAAAACGGAGCAACAATGGC
EST0374 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_09_06.M13+_F01.ab1, mRNA sequence.
FE861515.1:51-72
GATTGCTTCGGCAGAGGTTGAAGCGGCTCT51CACTACTCACCTCCTCGCACCTCTCATCTTCAGAAAACGGAGCAACAATGGC
Camellia sinensis mRNA, clone: YL21C02, 5' end sequence, expressed in young leaves.
FS960098.1:27-48
GCTTCGGCAGAGGTTGAAGCGGCTCT27CACTACTCACCTCCTCGCACCTCTCATCTTCAGAAAACGGAGCAACAATGGC
EST3096 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 08012802-OUYI_CHAG_36_93.M13+_E12, mRNA sequence.
GE652769.1:51-72
GATTGCTTCGGCAGAGGTTGAAGCGGCTCT51CACTACTCACCTCCTCGCACCTCTCATCTTCAGAAAACGGAGCAACAATGGC
EST3432 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone OUYI_CG_86.M13+_F11, mRNA sequence.
GE653105.1:33-54
TCGGCCATTACGGCCGGGGGAAGCGGCTCT33CACTACTCACCTCCTCGCACCTCTCATCTTCAGGTCTCTCTCTCTCTCTCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACTACTCACCTCCTCGCACCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACTACTCACCTCCTCGCACCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.686 | 0.678 | search_plus_done; http://172.18.8.135:50400/match?q=CACTACTCACCTCCTCGCACCT&k=0&no_gap=0&offset=0&limit=50
0.706 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=AGGTGCGAGGAGGTGAGTAGTG&k=0&no_gap=0&offset=0&limit=43
0.706 | 0.000 | cgi_end;

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