GGGenome | Results

2025-04-10 20:46:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

VDDG12 Arbuscular mycorrhizae (AM)-colonized Pigoen pea under drought stress library Cajanus cajan cDNA, mRNA sequence.
JK087081.1:727-747

GAAGAAGTAGAGAGTGCCATTAGTGTGTTT727CACTCTATCTCTTTGCTGTCGCCACACCAAACCCTCAGCTGCCGAGGTTTT

TSA: Cajanus cajan cultivar UPAS 120 contig29969.UPAS mRNA sequence.
EZ647686.1:1275-1295

GAAGAAGTAGAGAGTGCCATTAGTGTGTTT1275CACTCTATCTCTTTGCTGTCGCCACACCAAACCCTCAGCTGCCGAGGTTTT

TSA: Cajanus cajan cultivar Asha contig01006.Asha mRNA sequence.
EZ648870.1:1342-1362

GAAGAAGTAGAGAGTGCCATTAGTGTGTTT1342CACTCTATCTCTTTGCTGTCGCCACCCCACACCAAACCCTCAGCCGCCGAG

Vaccinium vitis-idaea genome assembly, chromosome: 2.
OY978216.1:17306085-17306105

TAGTACAGAGCTCTCTCATACTCGGTCACA17306085CACTCTATCTCTTTGCTGTCGCTTATTTAAGACTCCATTAAAGCCTCTGTC

Lepidonotus clava genome assembly, chromosome: 5.
OW387137.1:45608094-45608114

TAAACATCATTTGTCTAAAAGCAACGGAAG45608094CGACAGCAAAGAGATAGAGTGACAGAGTGTATGCCTGTAGGGTTTCCCAGA

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.216 | 0.207 | search_plus_done; http://172.18.8.135:50400/match?q=CACTCTATCTCTTTGCTGTCG&k=0&no_gap=0&offset=0&limit=50
0.243 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=CGACAGCAAAGAGATAGAGTG&k=0&no_gap=0&offset=0&limit=46
0.244 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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