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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 22:30:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Camellia sinensis tea_rep_c23168 mRNA sequence.
KA301596.1:60-91
GTCCTTTTGGTGCCTGAGTAAGCCAATGAA60CACTGTAAGAGGAATAAACTAAATGTAAGCTGTTACGAGGAAAAAGCCGGCCATGGAAAGAC
TSA: Camellia sinensis tea_s23638 mRNA sequence.
KA302032.1:59-90
GTCCTTTTGGTGCCTGAGTAAGCCAATGAA59CACTGTAAGAGGAATAAACTAAATGTAAGCTGTTACGAGGAAAAAGCCGGCCATGGAAAGAC
S2_P5G5_013_TRA_3897 Camellia assamica S2 cDNA library Camellia sinensis var. assamica cDNA 5', mRNA sequence.
HS398763.1:37-68
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA37CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
S5_P2F7_016_TRA_4477 Camellia assamica S5 cDNA library Camellia sinensis var. assamica cDNA 5', mRNA sequence.
HS399726.1:37-68
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA37CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
Tea203_2006-01-17_1/Tea203_D05_021_1 Camellia sinensis (tea) cultivar TRI2043 EST library Camellia sinensis cDNA, mRNA sequence.
JK475596.1:562-593
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA562CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
TSA: Camellia sinensis tea_rep_c951 mRNA sequence.
KA280393.1:582-613
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA582CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
TSA: Camellia sinensis tea_rep_c2762 mRNA sequence.
KA282189.1:552-583
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA552CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
TSA: Camellia sinensis tea_rep_c24363 mRNA sequence.
KA302721.1:170-201
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA170CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
TSA: Camellia sinensis tea_rep_c24596 mRNA sequence.
KA302947.1:280-311
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA280CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
TSA: Camellia sinensis tea_s25772 mRNA sequence.
KA304063.1:179-210
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA179CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
Camellia sinensis var. assamica caffeine synthase (CkCS) mRNA, complete cds.
MN163829.1:441-472
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA441CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

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