GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 21:36:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Geotrypetes seraphini genome assembly, chromosome: 1.
LR699146.1:280093628-280093647
GACACTACAAGGACAATAGTGCTACTGGGC280093628CAGAAACATCACTGGGTCTTGACTACTGTAATAGTATATCATAAAGATAA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_17241.
FX691965.1:3004-3023
GACTGCTAATCGCAGCATCGAATTCAGTAC3004CAGAAACATCACTGGGTCTTTTTCTTGAGCAGACAAGTTTGAAAAAATCA
Rattus norvegicus clone CH230-66L7, WORKING DRAFT SEQUENCE, 6 unordered pieces.
AC106547.4:210407-210426
TAATGAAAGAGGTTTTGTTATTAAAAAGAA210407CAGAAACATCACTGGGTCTTGATGAAAATGAAGATCCTTCATGTTGATAT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:54043164-54043183
GACTGCTAATCGCAGCATCGAATTCAGTAC54043164CAGAAACATCACTGGGTCTTTTTCTGCAGAAAAGGAAACAAAAAAAAAAA
Brassica napus genome assembly, chromosome: A06.
HG994360.1:39089771-39089790
GACTGCTAATCGCAGCATCGAATTCAGTAC39089771CAGAAACATCACTGGGTCTTTTTCTGCAGAAAAGGAAACAAAAAAAAAAA
Brassica rapa genome, scaffold: A06.
LR031569.1:49149125-49149144
GACTGCTAATCGCAGCATCGAATTCAGTAC49149125CAGAAACATCACTGGGTCTTTTTCTGCAGAAAAGGAAACAAAAAAAAAAA
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:52765525-52765544
GACTGCTAATCGCAGCATCGAATTCAGTAC52765525CAGAAACATCACTGGGTCTTTTTCTGCAGAAAAGGAAACAAAAAAAAAAA
Thlaspi arvense genome assembly, chromosome: 2.
OU466858.1:4453833-4453852
GACTGCTAATCGCAGAATCGAATTCAGTAC4453833CAGAAACATCACTGGGTCTTTTTCTGCAGAAGAGGAACAAAAATTCAAAT
Apteryx australis mantelli genome assembly, scaffold: scaffold73.
LK064657.1:2112663-2112682
ATGTCTAGTCATGCTCTAAACATGAAAAGG2112663AAGACCCAGTGATGTTTCTGATGCCCCACATAGCAGCTCTTATATATACA
Rattus norvegicus clone CH230-218H3, WORKING DRAFT SEQUENCE, 11 unordered pieces.
AC111291.3:202327-202346
ATATCAACATGAAGGATCTTCATTTTCATC202327AAGACCCAGTGATGTTTCTGTTCTTTTTAATAACAAAACCTCTTTCATTA
Brassica rapa subsp. pekinensis clone KBrH106B05, complete sequence.
CU915253.1:51034-51053
TTTTTTTTTTTGTTTCCTTTTCTGCAGAAA51034AAGACCCAGTGATGTTTCTGGTACTGAATTCGATGCTGCGATTAGCAGTC
Brassica rapa subsp. pekinensis clone KBrH020I11, complete sequence.
CU984558.1:52390-52409
TTTTTTTTTTTGTTTCCTTTTCTGCAGAAA52390AAGACCCAGTGATGTTTCTGGTACTGAATTCGATGCTGCGATTAGCAGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGAAACATCACTGGGTCTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGAAACATCACTGGGTCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.126 | 0.117 | search_plus_done; http://172.18.8.135:50400/match?q=CAGAAACATCACTGGGTCTT&k=0&no_gap=0&offset=0&limit=50
0.162 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=AAGACCCAGTGATGTTTCTG&k=0&no_gap=0&offset=0&limit=42
0.165 | 0.003 | cgi_end;

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