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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-13 03:42:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Nesoenas mayeri genome assembly, chromosome: 13.
OY720069.1:11924051-11924069
CTTTCATAGGAAAAAAATTGAGGATGAGAG11924051CAGATAATGGCAATAGAGGTTTGGGGAAAATAAATACTGGCCCTATCGC
RTDS2_8_B06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus taeda cDNA clone RTDS2_8_B06_A021 5', mRNA sequence.
CF394948.1:393-411
GTCCAAGGCCCAGTCCCAAGCCTTGCTGAG393CAGATAATGGCAATAGAGGCTGGCCTCCTCCTGCCTGGCTCATGTTCAA
WS0064.B21_G03 IS-B-A-7 Picea engelmannii x Picea glauca cDNA clone WS0064_G03 3', mRNA sequence.
CO205546.1:349-367
GTCCAAGACCCAGTCCCATTCCTTGCTGAG349CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
WS0036.B21_E07 WS-X-A-3 Picea glauca cDNA clone WS0036_E07 3', mRNA sequence.
CO243813.1:348-366
GTCCAAGACCCAGTCCCATTCCTTGCTGAG348CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
COLD1_8_H06.g1_A029 Root cold Pinus taeda cDNA clone COLD1_8_H06_A029 5', mRNA sequence.
CX646363.1:385-403
GTCCAAGGCCCAGTCCCAATCCTTGCTGAG385CAGATAATGGCAATAGAGGCTGGCCTCCTCCTGCCTGGCTCATGTTCAA
COLD1_53_G11.g1_A029 Root cold Pinus taeda cDNA clone COLD1_53_G11_A029 5', mRNA sequence.
CX651650.1:396-414
GTCCAAGGCCCAGTCCCAATCCTTGCTGAG396CAGATAATGGCAATAGAGGCTGGCCTCCTCCTGCCTGGCTCATGTTCAA
EST981583 Subtracted pine embryo library, Lib_C Pinus taeda cDNA clone PTABZ36, mRNA sequence.
DN630767.1:313-331
GTCCAAGGCCCAGTCCCAAGCCTTGCTGAG313CAGATAATGGCAATAGAGGCTGGCCTCCTCCTGCCTGGCTCATGTTCAA
EST983385 Subtracted pine embryo library, Lib_C Pinus taeda cDNA clone PTACR09, mRNA sequence.
DN632569.1:313-331
GTCCAAGGCCCAGTCCCAAGCCTTGCTGAG313CAGATAATGGCAATAGAGGCTGGCCTCCTCCTGCCTGGCTCATGTTCAA
4h10w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN966157.1:39-57
GAAAGTTGTAATACAATAGTGATGTTGATC39CAGATAATGGCAATAGAGGTTAAGAAACCTTCATCTACAAAAGCTATCT
HEAT1_4_D12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_4_D12_A029 5', mRNA sequence.
DR011268.1:317-335
GTCCAAGGCCCAGTCCCAATCCTTGCTGAG317CAGATAATGGCAATAGAGGCTGGCCTCCTCCTGCCTGGCTCATGTTCAA
HEAT1_6_B07.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_6_B07_A029 5', mRNA sequence.
DR011565.1:381-399
GTCCAAGGCCCAGTCCCAATCCTTGCTGAG381CAGATAATGGCAATAGAGGCTGGCCTCCTCCTGCCTGGCTCATGTTCAA
RTNIT1_17_F10.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone RTNIT1_17_F10_A029 5', mRNA sequence.
DR059456.1:347-365
GTCCAAGGCCCAGTCCCAATCCTTGCTGAG347CAGATAATGGCAATAGAGGCTGGCCTCCTCCTGCCTGGCTCATGTTCAA
RTDK1_5_H06.g1_A029 Roots, dark Pinus taeda cDNA clone RTDK1_5_H06_A029 5', mRNA sequence.
DR069247.1:356-374
GTCCAAGGCCCAGTCCCAATCCTTGCTGAG356CAGATAATGGCAATAGAGGCTGGCCTCCTCCTGCCTGGCTCATGTTCAA
STRR1_62_B12.g1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_62_B12_A033 5', mRNA sequence.
DR100216.1:353-371
GTCCAAGGCCCAGTCCCAATCCTTGCTGAG353CAGATAATGGCAATAGAGGCTGGCCTCCTCCTGCCTGGCTCATGTTCAA
WS02814.CR_L05 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02814_L05 3, mRNA sequence.
DR478706.1:350-368
GTCCAAGACCCAGTCCCATTCCTTGCTGAG350CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
WS0285.BR_N15 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS0285_N15 3, mRNA sequence.
DR481307.1:356-374
GTCCAAGACCCAGTCCCATTCCTTGCTGAG356CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
WS0298.BR_E19 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS0298_E19 3, mRNA sequence.
DR495530.1:391-409
GTCCAAGACCCAGTCCCATTCCTTGCTGAG391CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
WS0339.C21_A15 WS-SE-N-A-18 Picea glauca cDNA clone WS0339_A15 3, mRNA sequence.
DR585374.1:355-373
GTCCAAGACCCAGTCCCATTCCTTGCTGAG355CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCCA
WS03410.C21_M12 WS-SE-N-A-19 Picea glauca cDNA clone WS03410_M12 3, mRNA sequence.
DR586341.1:354-372
GTCCAAGACCCAGTCCCATTCCTTGCTGAG354CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
GQ0172.TB_L12 GQ017: Immature somatic EMBRYOS Picea glauca cDNA clone GQ0172_L12 3', mRNA sequence.
DV979226.2:370-388
GTCCAAGACCCAGTCCCATTCCTTGCTGAG370CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
GQ0173.TB_H21 GQ017: Immature somatic EMBRYOS Picea glauca cDNA clone GQ0173_H21 3', mRNA sequence.
DV979389.2:308-326
GTCCAAGACCCAGTCCCATTCCTTGCTGAG308CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
GQ0204.TB_B03 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ0204_B03 3', mRNA sequence.
DV985807.2:299-317
GTCCAAGACCCAGTCCCATTCCTTGCTGAG299CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
GQ02012.TB_M01 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ02012_M01 3', mRNA sequence.
DV987850.2:161-179
GTCCAAGACCCAGTCCCATTCCTTGCTGAG161CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
GQ02012.B7_M01 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ02012_M01 3', mRNA sequence.
DV988640.2:212-230
GTCCAAGACCCAGTCCCATTCCTTGCTGAG212CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
0085726 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV161864.1:91-109
GAAAGTTGTAATACAATAGTGATGTTGATC91CAGATAATGGCAATAGAGGTTAAGAAACCTTCATCTACAAAAGCTATCT
0085795 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV161933.1:142-160
GAAAGTTGTAATACAATAGTGATGTTGATC142CAGATAATGGCAATAGAGGTTAAGAAACCTTCATCTACAAAAGCTATCT
0132972 Brassica napus Root - drought Brassica napus cDNA, mRNA sequence.
EV217864.1:139-157
GAAAGTTGTAATACAATAGTGATGTTGATC139CAGATAATGGCAATAGAGGTTAAGAAACCTTCATCTACAAAAGCTATCT
GQ02804.SP6_E15 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02804_E15 3', mRNA sequence.
EX312638.1:381-399
GTCCAAGACCCAGTCCCATTCCTTGCTGAA381CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
GQ02907.SP6_N17 GQ029 - Xylem scrapings - AT NITE Picea glauca cDNA clone GQ02907_N17 3', mRNA sequence.
EX334782.1:337-355
GTCCAAGACCCAGTCCCATTCCTTGCTGAG337CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
GQ03006.SP6_N09 GQ030 - Xylem planings - daytime and seasonal Picea glauca cDNA clone GQ03006_N09 3', mRNA sequence.
EX338759.1:381-399
GTCCAAGACCCAGTCCCATTCCTTGCTGAG381CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
GQ03010.SP6_G21 GQ030 - Xylem planings - daytime and seasonal Picea glauca cDNA clone GQ03010_G21 3', mRNA sequence.
EX340887.1:399-417
GTCCAAGACCCAGTCCCATTCCTTGCTGAG399CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
GQ04008.SP6.r_J11 GQ040 - Shoot tip - Active growth (Normalized) Picea glauca cDNA clone GQ04008_J11 3', mRNA sequence.
GO370439.1:381-399
GTCCAAGACCCAGTCCCATTCCTTGCTGAG381CAGATAATGGCAATAGAGGCTGGCCTGCTCCTGCCTGGCTCATGTTCAA
PBA0114.CR_E05 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0114_E05 3', mRNA sequence.
GW747564.1:393-411
GTCCAAGGCCCAGTCCCAATCCTTGCTGAG393CAGATAATGGCAATAGAGGCTGGCCTCCTCCTGCCTGGCTCATGTTCAA
PBA0118.CR_I06 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0118_I06 3', mRNA sequence.
GW750497.1:420-438
GTCCAAGGCCCAGTCCCAATCCTTGCTGAG420CAGATAATGGCAATAGAGGCTGGCCTCCTCCTGCCTGGCTCATGTTCAA
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:18956650-18956668
GAAAGTTGTAATACAATAGTGATGTTGATC18956650CAGATAATGGCAATAGAGGTTAAGAAACCTTCATCTACAAAAGCTATCT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:18863713-18863731
GAAAGTTGTAATACAATAGTGATGTTGATC18863713CAGATAATGGCAATAGAGGTTAAGAAACCTTCATCTACAAAAGCTATCT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:30393521-30393539
ATACAACAATAATCCATAGTGATGTTGATC30393521CAGATAATGGCAATAGAGGTTAAGAAACCTTCATCTACAAAAGCTATTC
Brassica rapa genome, scaffold: A03.
LR031572.1:18666330-18666348
ATACAACAATAATCCATAGTGATGTTGATC18666330CAGATAATGGCAATAGAGGTTAAGAAACCTTCATCTACAAAAGCTATCT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:30416220-30416238
ATACAACAATAATCCATAGTGATGTTGATC30416220CAGATAATGGCAATAGAGGTTAAGAAACCTTCATCTACAAAAGCTATTC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:18793143-18793161
ATACAACAATAATCCATAGTGATGTTGATC18793143CAGATAATGGCAATAGAGGTTAAGAAACCTTCATCTACAAAAGCTATCT
Exephanes ischioxanthus genome assembly, chromosome: 7.
OY294021.1:14941406-14941424
CGCCACCGATGACTAATTCGCCGAATTTTA14941406CAGATAATGGCAATAGAGGAGTCGTTTCAATACATTCCTCAAAACACCA
NXSI_142_H10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA clone NXSI_142_H10 5' similar to Arabidopsis thaliana sequence At1g17370 oligouridylate binding protein, putative see http://mips.gs
BG275360.1:282-300
TTGAACATGAGCCAGGCAGGAGGAGGCCAG282CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
NXLV_078_F08_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV_078_F08 5' similar to Arabidopsis thaliana sequence At1g17370 oligouridylate binding protein, putative see http://mips.gs
BM903049.1:399-417
TTGAACATGAGCCAGGCAGGAGGAGGNNAG399CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTDR1_11_C08.b1_A015 Loblolly pine roots recovering from drought DR1 Pinus taeda cDNA clone RTDR1_11_C08_A015 3', mRNA sequence.
CF387187.1:157-175
TTGAACATGAGCCAGGCAGGAGGAGGCCAG157CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTDR1_11_C08.g1_A015 Loblolly pine roots recovering from drought DR1 Pinus taeda cDNA clone RTDR1_11_C08_A015 5', mRNA sequence.
CF387218.1:126-144
TTGAACATGAGCCAGGCAGGAGGAGGCCAG126CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTDR2_20_E01.b1_A021 Loblolly pine roots recovering from drought DR2 Pinus taeda cDNA clone RTDR2_20_E01_A021 3', mRNA sequence.
CF390563.1:245-263
TTGAACATGAGCCAGGCAGGAGGAGGCCAG245CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTDR2_20_G01.g1_A021 Loblolly pine roots recovering from drought DR2 Pinus taeda cDNA clone RTDR2_20_G01_A021 5', mRNA sequence.
CF390653.1:525-543
TTGAACATGAGCCAGGCAGGAGGAGGCCAG525CCTCTATTGCCATTATCTGCTCAGCAAAGGATTGGGACTGGGCCTTGGA
RTDR3_5_H02.b1_A022 Loblolly pine roots recovering from drought DR3 Pinus taeda cDNA clone RTDR3_5_H02_A022 3', mRNA sequence.
CF392599.1:146-164
TTGAACATGAGCCAGGCAGGAGGAGGCCAG146CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTDS3_24_H11.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus taeda cDNA clone RTDS3_24_H11_A022 3', mRNA sequence.
CF398210.1:117-135
TTGAACATGAGCCAGGCAGGAGGAGGCCAG117CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTDS1_17_F09.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus taeda cDNA clone RTDS1_17_F09_A015 3', mRNA sequence.
CF470392.1:102-120
TTGAACATGAGCCAGGCAGGAGGAGGCCAG102CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
estPmaLU_SB12 Picea mariana cDNA libraries Picea mariana STS cDNA, sequence tagged site.
BV729051.1:336-354
TTGAACATGAGCCAGGCAGGAGCAGGCCAG336CCTCTATTGCCATTATCTGCTCAGCAAGGAATGGGACTGGGTCTTGGAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH040N18, complete sequence.
AC241128.1:32342-32360
AGATAGCTTTTGTAGATGAAGGTTTCTTAA32342CCTCTATTGCCATTATCTGGATCAACATCACTATTGTATTACAACTTTC
Picea mariana putative RNA-binding protein (Sb12) mRNA, partial cds.
AF051208.1:336-354
TTGAACATGAGCCAGGCAGGAGCAGGCCAG336CCTCTATTGCCATTATCTGCTCAGCAAGGAATGGGACTGGGTCTTGGAC
Picea glauca clone GQ04008_J11 mRNA sequence.
BT118651.1:1432-1450
TTGAACATGAGCCAGGCAGGAGCAGGCCAG1432CCTCTATTGCCATTATCTGCTCAGCAAGGAATGGGACTGGGTCTTGGAC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:48712275-48712293
GAATAGCTTTTGTAGATGAAGGTTTCTTAA48712275CCTCTATTGCCATTATCTGGATCAACATCACTATGGATTATTGTTGTAT
Picea sitchensis clone WS0285_N15 unknown mRNA.
EF678228.1:1426-1444
TTGAACATGAGCCAGGCAGGAGCAGGCCAG1426CCTCTATTGCCATTATCTGCTCAGCAAGGAATGGGACTGGGTCTTGGAC
Hedera helix genome assembly, chromosome: 1.
OX359264.1:40112990-40113008
TCCCTTAAGCTCCGATTTTACCGTTTCAAC40112990CCTCTATTGCCATTATCTGCAAAATAAACATAAAAACAAGTAAGGTAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGATAATGGCAATAGAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGATAATGGCAATAGAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.836 | 1.827 | search_plus_done; http://172.18.8.135:50400/match?q=CAGATAATGGCAATAGAGG&k=0&no_gap=0&offset=0&limit=50
2.083 | 0.246 | search_minus_done; http://172.18.8.135:50400/match?q=CCTCTATTGCCATTATCTG&k=0&no_gap=0&offset=0&limit=9
2.093 | 0.011 | cgi_end;

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