GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 07:58:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
LR812262.1:294613959-294613978
GAGGTATTTTTCATGTCGTAGAATATGCAG294613959CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
LR828088.1:281098047-281098066
GAGGTATTTTTCATGTCGTAGAATATGCAG281098047CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
LR828109.1:272828988-272829007
GAGGTATTTTTCATGTCGTAGAATATGCAG272828988CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
LR828161.1:289963194-289963213
GAGGTATTTTTCATGTCGTAGAATATGCAG289963194CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OU015702.1:290058776-290058795
GAGGTATTTTTCATGTCGTAGAATATGCAG290058776CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare genome assembly, chromosome: 2H.
OX459931.1:279781677-279781696
GAGGTATTTTTCATGTCGTAGAATATGCAG279781677CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX459971.1:283200314-283200333
GAGGTATTTTTCATGTCGTAGAATATGCAG283200314CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX459992.1:276914244-276914263
GAGGTATTTTTCATGTCGTAGAATATGCAG276914244CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX460006.1:282755227-282755246
GAGGTATTTTTCATGTCGTAGAATATGCAG282755227CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAATGAA
Hordeum vulgare genome assembly, chromosome: 2H.
OX460020.1:276252140-276252159
GAGGTATTTTTCATGTCGTAGAATATGCAG276252140CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX460027.1:285566767-285566786
GAGGTATTTTTCATGTCATAGAATATGCAG285566767CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX460041.1:282492689-282492708
GAGGTATTTTTCATGTCGTAGAATATGCAG282492689CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX460048.1:278429877-278429896
GAGGTATTTTTCATGTCGTAGAATATGCAG278429877CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare genome assembly, chromosome: 2H.
OX460069.1:279152222-279152241
GAGGTATTTTTCATGTCGTAGAATATGCAG279152222CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare genome assembly, chromosome: 1H.
OX460075.1:492318315-492318334
GAGGTATTTTTCATGTTGTAGAATATGCAT492318315CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAACGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX460083.1:279664876-279664895
GAGGTATTTTTCATGTCGTAGAATATGCAG279664876CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX460090.1:287790542-287790561
GAGGTATTTTTCATGTCGTAGAATATGCAG287790542CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAATGAA
Hordeum vulgare genome assembly, chromosome: 1H.
OX460096.1:494438691-494438710
GAGGTATTTTTCATGTTGTAGAATATGCAT494438691CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAACGAA
Hordeum vulgare genome assembly, chromosome: 1H.
OX460124.1:496234825-496234844
GAGGTATTTTTCATGTTGTAGAATATGCAT496234825CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAACGAA
Hordeum vulgare genome assembly, chromosome: 2H.
OX460132.1:279505979-279505998
GAGGTATTTTTCATGTCGTAGAATATGCAG279505979CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAATGAA
Hordeum vulgare genome assembly, chromosome: 1H.
OX460166.1:492527743-492527762
GAGGTATTTTTCATGTTGTAGAATATGCAT492527743CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAACGAA
Hordeum vulgare genome assembly, chromosome: 1H.
OX460173.1:498706307-498706326
GAGGTATTTTTCATGTTGTAGAATATGCAT498706307CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAACGAA
Hordeum vulgare genome assembly, chromosome: 1H.
OX460187.1:494140380-494140399
GAGGTATTTTTCATGTTGTAGAATATGCAT494140380CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAACGAA
Hordeum vulgare genome assembly, chromosome: 2H.
OX460209.1:281126558-281126577
GAGGTATTTTTCATGTCGTAGAATATGCAG281126558CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare genome assembly, chromosome: 1H.
OX460236.1:491910471-491910490
GAGGTATTTTTCATGTTGTAGAATATGCAT491910471CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAACGAA
Hordeum vulgare genome assembly, chromosome: 1H.
OX460243.1:497374373-497374392
GAGGTATTTTTCATGTTGTAGAATATGCAT497374373CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAACGAA
Hordeum vulgare genome assembly, chromosome: 2H.
OX460244.1:282477079-282477098
GAGGTATTTTTCATGTCGTAGAATATGCAG282477079CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare genome assembly, chromosome: 1H.
OX460264.1:493386596-493386615
GAGGTATTTTTCATGTTGTAGAATATGCAT493386596CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAACGAA
Hordeum vulgare genome assembly, chromosome: 2H.
OX460265.1:277071095-277071114
GAGGTATTTTTCATGTCGTAGAATATGCAG277071095CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare genome assembly, chromosome: 2H.
OX460293.1:278951184-278951203
GAGGTATTTTTCATGTCGTAGAATATGCAG278951184CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX590735.1:279528709-279528728
GAGGTATTTTTCATGTCGTAGAATATGCAG279528709CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX590742.1:280711586-280711605
GAGGTATTTTTCATGTCGTAGAATATGCAG280711586CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX590749.1:279603057-279603076
GAGGTATTTTTCATGTCGTAGAATATGCAG279603057CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAGCAATGAA
Hordeum vulgare f. agriocrithon genome assembly, chromosome: 1H.
OX590755.1:492401162-492401181
GAGGTATTTTTCATGTTGTAGAATATGCAT492401162CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAACGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX590763.1:281995927-281995946
GAGGTATTTTTCATGTCGTAGAATATGCAG281995927CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638743.1:280318769-280318788
GAGGTATTTTTCATGTCGTAGAATATGCAG280318769CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638764.1:283816419-283816438
GAGGTATTTTTCATGTCGTAGAATATGCAG283816419CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638771.1:278077283-278077302
GAGGTATTTTTCATGTCGTAGAATATGCAG278077283CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638778.1:277062232-277062251
GAGGTATTTTTCATGTCGTAGAATATGCAG277062232CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638799.1:281436547-281436566
GAGGTATTTTTCATGTCGTAGAATATGCAG281436547CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare genome assembly, chromosome: 1H.
OX638819.1:489270129-489270148
GAGGTATTTTTCATGTTGTAGAATATGCAT489270129CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAACGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638869.1:282596356-282596375
GAGGTATTTTTCATGTCGTAGAATATGCAG282596356CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638876.1:282447647-282447666
GAGGTATTTTTCATGTCGTAGAATATGCAG282447647CAGCCGATGATGTGAGTCTATTATGCGTGTTGCCACAATAAAACAATGAA
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737429.1:41998327-41998346
GAGGTATTTTTTATGTCGTAGAATATGCAT41998327CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAGTGAA
Hordeum bulbosum genome assembly, chromosome: 7H_4.
OY737516.1:31236720-31236739
GAGGTATTTTTCATGTCGTAGAATATGCAT31236720CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAGTGAA
Hordeum bulbosum genome assembly, chromosome: 3H_3.
OY737534.1:42013337-42013356
GAGGTATTTTTTATGTCGTAGAATATGCAT42013337CAGCCGATGATGTGAGTCTATTATGCGAGTTACCACAATAAAACAGTGAA
Hordeum bulbosum genome assembly, chromosome: 2H_3.
OY737655.1:111151960-111151979
GAGGTATTTTTCATGTCCTAGAATATGCAT111151960CAGCCGATGATGTGAGTCTATTATGCGAGTTGCCACAATAAAACAGTGAA
Hordeum bulbosum genome assembly, chromosome: 7H_4.
OY737667.1:5921246-5921265
GAGGTATTTTTCATGTCGTAGAATATGCAT5921246CAGCCGATGATGTGAGTCTATTATGCGAGTTACCACAATAAAATAGTGAA
Hordeum vulgare subsp. vulgare cultivar Morex clone BAC 0198I17, *** SEQUENCING IN PROGRESS ***, 51 unordered pieces.
AC263629.1:4480-4499
TTCACTATTTTATTGTGGCAACTCGCATAA4480TAGACTCACATCATCGGCTGATGCATATTCCACGACATGAAAAATACCTC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
HG994379.1:120431755-120431774
TTCATTGTTTTATTGTGGCAACTCGCATAA120431755TAGACTCACATCATCGGCTGATGCATATTCTATGACATGAAAAATACCTC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
HG994380.1:38325613-38325632
TTCACTATTTTATTGTGGCAACTCGCATAA38325613TAGACTCACATCATCGGCTGATGCATATTCCACGACATGAAAAATACCTC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828099.1:135387552-135387571
TTCATTGTTTTATTGTGGCAACTCGCATAA135387552TAGACTCACATCATCGGCTGATGCATATTCTACGACATGAAAAATACCTC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828100.1:48811139-48811158
TTCACTATTTTATTGTGGCAACTCGCATAA48811139TAGACTCACATCATCGGCTGATGCATATTCCACGACTTGAAAAATACCTC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR890101.1:140571756-140571775
TTCATTGTTTTATTGTGGCAACTCGCATAA140571756TAGACTCACATCATCGGCTGATGCATATTCTACGACATGAAAAATACCTC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR890102.1:52789149-52789168
TTCACTATTTTATTGTGGCAACTCGCATAA52789149TAGACTCACATCATCGGCTGATGCATATTCCACGACATGAAAAATACCTC
Hordeum vulgare genome assembly, chromosome: 6H.
OU701468.1:121012607-121012626
TTCATTGTTTTATTGTGGCAACTCGCATAA121012607TAGACTCACATCATCGGCTGATGCATATTCTACGACATGAAAAATACCTC
Hordeum vulgare genome assembly, chromosome: 7H.
OU701469.1:41319684-41319703
TTCACTATTTTATTGTGGCAACTCGCATAA41319684TAGACTCACATCATCGGCTGATGCATATTCCACGACATGAAAAATACCTC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
OX459907.1:139073108-139073127
TTCATTGTTTTATTGTGGCAACTCGCATAA139073108TAGACTCACATCATCGGCTGATGCATATTCTATGACATGAAAAATACCTC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
OX459908.1:50479294-50479313
TTCACTATTTTATTGTGGCAACTCGCATAA50479294TAGACTCACATCATCGGCTGATGCATATTCCACGACATGAAAAATACCTC
Hordeum vulgare genome assembly, chromosome: 6H.
OX460122.1:139342695-139342714
TTCATTGTTTTATTGTGGCAACTCGCATAA139342695TAGACTCACATCATCGGCTGATGCATATTCTACGACATGAAAAATACCTC
Hordeum vulgare genome assembly, chromosome: 6H.
OX460129.1:145520709-145520728
TTCATTGTTTTATTGTGGCAACTCGCATAA145520709TAGACTCACATCATCGGCTGATGCATATTCTACGACATGAAAAATACCTC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX590767.1:137780030-137780049
TTCATTGTTTTATTGTGGCAACTCGCATAA137780030TAGACTCACATCATCGGCTGATGCATATTCTACGACATGAAAAATACCTC
Hordeum vulgare genome assembly, chromosome: 6H.
OX638658.1:140846471-140846490
TTCATTGTTTTATTGTGGCAACTCGCATAA140846471TAGACTCACATCATCGGCTGATGCATATTCTACGACATGAAAAATACCTC
Hordeum bulbosum genome assembly, chromosome: 7H_2.
OY737473.1:108763198-108763217
TTCACTGTTTTATTGTGGCAACTCGCATAA108763198TAGACTCACATCATCGGCTGATGCATATTCTACGACATGAAAAATACCTC
Hordeum bulbosum genome assembly, chromosome: 1H_3.
OY737474.1:39918407-39918426
TTCACTGTTTTATTGTGGTAACTCGCATAA39918407TAGACTCACATCATCGGCTGATGCATATTCTACGACATGAAAAATACCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGCCGATGATGTGAGTCTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGCCGATGATGTGAGTCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.106 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=CAGCCGATGATGTGAGTCTA&k=0&no_gap=0&offset=0&limit=50
0.163 | 0.057 | search_minus_done; http://172.18.8.135:50400/match?q=TAGACTCACATCATCGGCTG&k=0&no_gap=0&offset=0&limit=2
0.174 | 0.011 | cgi_end;

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