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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 23:28:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Camellia sinensis mRNA, clone: RT24F10, unspecified EST, sequenced using T7 primer, expressed in roots.
FS949886.1:273-294
GCCTCTTCTTCTCATCACAAAGCTCAAATG273CAGGAGGATTGTTTATTCCACAACTCAGGAATCCCCCCCAATTCACAACTCC
Camellia sinensis mRNA, clone: RT8G01, unspecified EST, sequenced using SP6 primer, expressed in roots.
FS952042.1:194-215
GCCTCTTCTTCTCATCACAAAGCTCAAATG194CAGGAGGATTGTTTATTCCACAACTCAGGAATCCCCCCCAATTCACAACTCC
ESTFullTSD1_68 ESTFullTSD1 Camellia sinensis var. assamica cDNA clone A187 5', mRNA sequence.
GH709622.1:240-261
GCCTCTTCTTCTCATCGCAAAGCTCAAATG240CAGGAGGATTGTTTATTCCACAACTCAGGAATCCCCCCCAATTCACAACTCC
TSA: Camellia sinensis tea_rep_c612 mRNA sequence.
KA280055.1:186-207
GCCTCTTCTTCTCATCACAAAGCTCAAATG186CAGGAGGATTGTTTATTCCACAACTCAGGAATCCCCCCCAATTCACAACTCC
TSA: Camellia sinensis tea_rep_c2201 mRNA sequence.
KA281636.1:238-259
GCCTCTTCTTCTCATCACAAAGCTCAAATG238CAGGAGGATTGTTTATTCCACAACTCAGGAATCCCCCCCAATTCACAACTCC
JP 2022127485-A/4: Method for identification of tea cultivars.
PA554013.1:68-89
ATTACGGCCGGGGGGGGGGGATTCCTGAGT68TGTGGAATAAACAATCCTCCTGCATTTGAGCTTTGTGATGAGAAGAAGAGGC
JP 2022127485-A/22: Method for identification of tea cultivars.
PA554031.1:1-22
1TGTGGAATAAACAATCCTCCTG
Camellia sinensis mRNA, clone: LR28B05, 5' end sequence, expressed in lateral roots.
FS945434.1:171-192
GGAGTTGTGAATTGGGGGGGATTCCTGAGT171TGTGGAATAAACAATCCTCCTGCATTTGAGCTTTGTGATGAGAAGAAGAGGC
Camellia sinensis mRNA, clone: RT24F10, unspecified EST, sequenced using SP6 primer, expressed in roots.
FS949885.1:157-178
GGAGTTGTGAATTGGGGGGGATTCCTGAGT157TGTGGAATAAACAATCCTCCTGCATTTGAGCTTTGTGATGAGAAGAAGAGGC
Camellia sinensis mRNA, clone: SS07F03, 5' end sequence, expressed in shoot stems.
FS952676.1:613-634
GGAGTTGTGAATTGGGGGGGATTCCTGAGT613TGTGGAATAAACAATCCTCCTGCATTTGAGCTTTGTGATGAGAAGAAGAGGC
Camellia sinensis mRNA, clone: SS27C12, 5' end sequence, expressed in shoot stems.
FS954106.1:34-55
GGAGTTGTGAATTGGGGGGGATTCCTGAGT34TGTGGAATAAACAATCCTCCTGCATTTGAGCTTTGTGATGAGAAGAAGAGGC
Camellia sinensis mRNA, clone: TR16H07, 5' end sequence, expressed in tap roots.
FS957621.1:683-704
GGAGTTGTGAATTGGGGGGGATTCCTGAGT683TGTGGAATAAACAATCCTCCTGCATTTGAGCTTTGTGATGAGAAGAAGAGGC
EST1994 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_20_75.M13+_C10.ab1, mRNA sequence.
GE651667.1:460-481
GGAGTTGTGAATTGGGGGGGATTCCTGAGT460TGTGGAATAAACAATCCTCCTGCATTTGAGCTTTGTGATGAGAAGAAGAGGC
SDSS2_7 SDSS2 Camellia sinensis var. sinensis cDNA clone P7 5', mRNA sequence.
GH710836.1:68-89
ATTACGGCCGGGGGGGGGGGATTCCTGAGT68TGTGGAATAAACAATCCTCCTGCATTTGAGCTTTGTGATGAGAAGAAGAGGC
Tea005_2005-10-27_1/Tea005_C09_038_1 Camellia sinensis (tea) cultivar DT1 EST library Camellia sinensis cDNA, mRNA sequence.
JK478601.1:22-43
GGGGGGGGGGGATTCCTGAGT22TGTGGAATAAACAATCCTCCTGCATTTGAGCTTTGTGATGAGAAGAAGAGGC
Camellia sinensis sucrose synthase 1 mRNA, complete cds.
KF921302.1:2694-2715
GGAGTTGTGAATTGGGGGGGATTCCTGAGT2694TGTGGAATAAACAATCCTCCTGCATTTGAGCTTTGTGATGAGAAGAAGAGGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGGAGGATTGTTTATTCCACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGGAGGATTGTTTATTCCACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.338 | 0.330 | search_plus_done; http://172.18.8.135:50400/match?q=CAGGAGGATTGTTTATTCCACA&k=0&no_gap=0&offset=0&limit=50
1.143 | 0.804 | search_minus_done; http://172.18.8.135:50400/match?q=TGTGGAATAAACAATCCTCCTG&k=0&no_gap=0&offset=0&limit=45
1.150 | 0.007 | cgi_end;

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