GGGenome | Results

Database:
mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 02:16:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Elaeis guineensis isotig02833.Elguifruit mRNA sequence.
JO090086.1:279-302

ATAGGTGACATACAGCACTTCAAACAGCAG279CAGGATCACCAACCCTCGGAAATTACTGGAGGGTGGTGAACAATTTATAAATGA

Elaeis guineensis 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase 1-like protein mRNA, complete cds.
KC146052.1:1024-1047

TCATTTATAAATTGTTCACCACCCTCCAGT1024AATTTCCGAGGGTTGGTGATCCTGCTGCTGTTTGAAGTGCTGTATGTCACCTAT

Data Export:

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Tab-delimited text: Open in new window | Download
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BED format: Link | Download
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JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.112 | 0.104 | search_plus_done; http://172.18.8.135:50400/match?q=CAGGATCACCAACCCTCGGAAATT&k=0&no_gap=0&offset=0&limit=50
0.132 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=AATTTCCGAGGGTTGGTGATCCTG&k=0&no_gap=0&offset=0&limit=49
0.133 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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