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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 15:38:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CA00-XX-FB1-028-H12-MC.F Coffea arabica FB1 Coffea arabica cDNA clone CA00-XX-FB1-028-H12-MC, mRNA sequence.
GW475263.1:73-93
GGTGAACTGTACAAATTCCAAAGTAAGCAG73CAGGCATTGGAACCAGCGAACCGCTACATGAAGAGAAGAGTGGCTTTAAAG
CGN-51276 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w4o11 5', mRNA sequence.
DV704478.1:154-174
TCTCTTCTCTTCTCTTCTCTTCATGTAGCG154GTTCGCTGGTTCCAATGCCTGCTGCTTACTTTGGAATTTGTACAGTTCACC
CGN-51366 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w6e24 5', mRNA sequence.
DV704548.1:154-174
TCTCTTCTCTTCTCTTCTCTTCATGTAGCG154GTTCGCTGGTTCCAATGCCTGCTGCTTACTTTGGAATTTGTACAGTTCACC
CGN-51795 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w9m7 5', mRNA sequence.
DV704883.1:154-174
TCTCTTCTCTTCTCTTCTCTTCATGTAGCG154GTTCGCTGGTTCCAATGCCTGCTGCTTACTTTGGAATTTGTACAGTTCACC
CGN-52369 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w3e7 5', mRNA sequence.
DV705339.1:154-174
TCTCTTCTCTTCTCTTCTCTTCATGTAGCG154GTTCGCTGGTTCCAATGCCTGCTGCTTACTTTGGAATTTGTACAGTTCACC
CGN-53528 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w10g22 5', mRNA sequence.
DV706202.1:151-171
TCTCTTCTCTTCTCTTCTCTTCATGTAGCG151GTTCGCTGGTTCCAATGCCTGCTGCTTACTTTGGAATTTGTACAGTTCACC
CGN-53868 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w12n4 5', mRNA sequence.
DV706451.1:154-174
TCTCTTCTCTTCTCTTCTCTTCATGTAGCG154GTTCGCTGGTTCCAATGCCTGCTGCTTACTTTGGAATTTGTACAGTTCACC
CC-F01_017_P02 Cherry of different development stage Coffea canephora cDNA clone CC-F01_017_P02, mRNA sequence.
EE199881.1:127-147
TCTCTTCTCTTCTCTTCTCTTCATGTAGCG127GTTCGCTGGTTCCAATGCCTGCTGCTTACTTTGGAATTTGTACAGTTCACC
CA00-XX-PA1-013-E07-EC.F Coffea arabica PA1 Coffea arabica cDNA clone CA00-XX-PA1-013-E07-EC, mRNA sequence.
GT684459.1:157-177
TTCCTTCTCTTCTCTTCTCTTCATGTAGCG157GTTCGCTGGTTCCAATGCCTGCTGCTTACTTTGGAATTTGTACAGTTCACC
CA00-XX-CA1-018-F01-JE.F Coffea arabica CA1 Coffea arabica cDNA clone CA00-XX-CA1-018-F01-JE, mRNA sequence.
GT691087.1:149-169
TTCCTTCTCTTCTCTTCTCTTCATGCAGCG149GTTCGCTGGTTCCAATGCCTGCTTCCTTTGGAATTTGTACAGTTCACCTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGGCATTGGAACCAGCGAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGGCATTGGAACCAGCGAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.188 | 0.179 | search_plus_done; http://172.18.8.135:50400/match?q=CAGGCATTGGAACCAGCGAAC&k=0&no_gap=0&offset=0&limit=50
0.669 | 0.482 | search_minus_done; http://172.18.8.135:50400/match?q=GTTCGCTGGTTCCAATGCCTG&k=0&no_gap=0&offset=0&limit=49
0.675 | 0.006 | cgi_end;

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