GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 22:48:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis clone KBrH017P16, complete sequence.
FP325101.1:27620-27639
TTTACTCTTAACAATAACTATATATTAACA27620CAGGCTATACTAGGCAGGCATGGTCTTATTTTACCCTAAACCGAAGTTCG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:51894198-51894217
TTTACTCTTAACAATAACTATATATTAACA51894198CAGGCTATACTAGGCAGGCATGGTCTTATTTTACCCTAAACCGAAGTTCG
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:66501168-66501187
TTTACTCTTAACAATAACTATATATTAACA66501168CAGGCTATACTAGGCAGGCATGGTCTTATTTTACCCTAAACCGAAGTTCG
Epinotia bilunana genome assembly, chromosome: 1.
OX346253.1:15662999-15663018
CAAAAACGTATGCCTGCCTAGTATAGCCTG15662999CAGGCTATACTAGGCAGGCATACGTTTTTGTGCGGTAGTACATTGCGAGT
Pheosia tremula genome assembly, chromosome: 10.
HG995407.1:1130424-1130443
GAAAGACACTTTGTTAGTATAGCCTACTGG1130424TGCCTGCCTAGTATAGCCTGCCTGGTGTACTCAAAGTAAGAACTACTAGT
Epinotia bilunana genome assembly, chromosome: 1.
OX346253.1:15662979-15662998
ATTATTAGTTTACTACCGCACAAAAACGTA15662979TGCCTGCCTAGTATAGCCTGCAGGCTATACTAGGCAGGCATACGTTTTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGGCTATACTAGGCAGGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGGCTATACTAGGCAGGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=CAGGCTATACTAGGCAGGCA&k=0&no_gap=0&offset=0&limit=50
0.128 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=TGCCTGCCTAGTATAGCCTG&k=0&no_gap=0&offset=0&limit=46
0.130 | 0.001 | cgi_end;

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