GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 20:49:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JP 2004016024-A/9: A primer for detecting DNA of the Brassica oleracea var. capitata.
BD410875.1:1492-1515
ACTTGTTAGTCATTCCTTGTTTTTGTTGTG1492CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTCAGGGACC
Brassica oleracea var. capitata DNA, STS, OPA06-1500.
AB088220.1:1492-1515
ACTTGTTAGTCATTCCTTGTTTTTGTTGTG1492CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTCAGGGACC
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:39756346-39756369
ACTTGTTAGTCATTCCTTGTTTTTGTTGTG39756346CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTCAGGGACCAGA
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:1452679-1452702
CTTGTTAGTCATTCCTTTGTTTTTGTTATG1452679CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTTAGGGACCAGA
Brassica napus genome assembly, chromosome: A04.
HG994358.1:1351609-1351632
CTTGTTAGTCATTCCTTTGTTTTTGTTATG1351609CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTTAGGGACCAGA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:34481888-34481911
ACTTGTTAGTCATTCCTTGTTTTTGTTGTG34481888CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTCAGGGACCAGA
Brassica rapa genome, scaffold: A04.
LR031576.1:1339725-1339748
CTTGTTAGTCATTCCTTTGTTTTTGTTATG1339725CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTTAGGGACCAGA
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:33582525-33582548
ACTTGTTAGTCATTCCTTGTTTTTGTTGTG33582525CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTCAGGGACCAGA
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:1361970-1361993
CTTGTTAGTCATTCCTTTGTTTTTGTTATG1361970CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTTAGGGACCAGA
JP 2004016024-A/6: A primer for detecting DNA of the Brassica oleracea var. capitata.
BD410872.1:1-24
1GCAAGATCTTGCTCTGATCACCTG
odf15c12.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH940689.1:292-315
TCTGGTCCCTGACAACATTCTTATCACTTG292GCAAGATCTTGCTCTGATCACCTGCACAACAAAAACAAGGAATGACTAACAAGT
BONOQ56TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONOQ56, genomic survey sequence.
BZ498823.1:218-241
TCTGGTCCCTGACAACATTCTTATCACTTG218GCAAGATCTTGCTCTGATCACCTGCACAACAAAAACAAGGAATGACTAACAAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGGTGATCAGAGCAAGATCTTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGGTGATCAGAGCAAGATCTTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.123 | 0.113 | search_plus_done; http://172.18.8.135:50400/match?q=CAGGTGATCAGAGCAAGATCTTGC&k=0&no_gap=0&offset=0&limit=50
0.160 | 0.037 | search_minus_done; http://172.18.8.135:50400/match?q=GCAAGATCTTGCTCTGATCACCTG&k=0&no_gap=0&offset=0&limit=41
0.162 | 0.002 | cgi_end;

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