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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 18:32:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Rana temporaria genome assembly, chromosome: 3.
LR991682.1:51037646-51037666
TGCAGTGTGCTGGCTATGTGCAGGATTGCA51037646CAGTGGAGAGGAGATCAGGAAGCTGCAGCAGTGATCATCTGGACGGGTTCT
GA__Ea0028A01r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0028A01r, mRNA sequence.
BM360148.1:153-173
GGTTCTTAACAATCAGAAACTTGAAAACAA153CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
GA__Ed0057A11r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0057A11r, mRNA sequence.
BQ412360.1:152-172
GGTTCTTAACAATCAGAAACTTGAAAACAA152CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
GR__Ea49C02.f GR__Ea Gossypium raimondii cDNA clone GR__Ea49C02 5', mRNA sequence.
CO083853.1:171-191
GGTTCTTAACAATCAGAAACTTGAAAACAA171CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
GR__Eb0031J15.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0031J15 5', mRNA sequence.
CO103311.1:171-191
GGTTCTTAACAATCAGAAACTTGAAAACAA171CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
GR__Eb0031J23.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0031J23 5', mRNA sequence.
CO103318.1:171-191
GGTTCTTAACAATCAGAAACTTGAAAACAA171CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
GR__Eb0044J15.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0044J15 5', mRNA sequence.
CO110402.1:171-191
GGTTCTTAACAATCAGAAACTTGAAAACAA171CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
GR__Eb020I13.f GR__Eb Gossypium raimondii cDNA clone GR__Eb020I13 5', mRNA sequence.
CO118264.1:237-257
GGTTCTTAACAATCAGAAACTTGAAAACAA237CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
GR__Eb022C13.f GR__Eb Gossypium raimondii cDNA clone GR__Eb022C13 5', mRNA sequence.
CO119312.1:193-213
GGTTCTTAACAATCAGAAACTTGAAAACAA193CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
GR__Eb07P21.r GR__Eb Gossypium raimondii cDNA clone GR__Eb07P21 3', mRNA sequence.
CO124834.1:171-191
GGTTCTTAACAATCAGAAACTTGAAAACAA171CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
GR__Eb10C23.r GR__Eb Gossypium raimondii cDNA clone GR__Eb10C23 3', mRNA sequence.
CO126257.1:172-192
GGTTCTTAACAATCAGAAACTTGAAAACAA172CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
GR__Eb31J15.f GR__Eb Gossypium raimondii cDNA clone GR__Eb31J15 5', mRNA sequence.
CO130049.1:171-191
GGTTCTTAACAATCAGAAACTTGAAAACAA171CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
GR__Eb31J23.f GR__Eb Gossypium raimondii cDNA clone GR__Eb31J23 5', mRNA sequence.
CO130063.1:171-191
GGTTCTTAACAATCAGAAACTTGAAAACAA171CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
GR__Eb43G07.f GR__Eb Gossypium raimondii cDNA clone GR__Eb43G07 5', mRNA sequence.
CO131207.1:171-191
GGTTCTTAACAATCAGAAACTTGAAAACAA171CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
GR__Eb44J15.f GR__Eb Gossypium raimondii cDNA clone GR__Eb44J15 5', mRNA sequence.
CO132012.1:171-191
GGTTCTTAACAATCAGAAACTTGAAAACAA171CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
COT_DS_F05 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (NM_111817) putative adenosine kinase; protein id: At3g09820.1, mRNA sequence.
DT049901.1:159-179
GGTTCTTAACAATCAGAAACTTGAAAACAA159CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
COT_EB_C07 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (M88324) late embryogenesis-abundant protein [Gossypium hirsutum], mRNA sequence.
DT050578.1:158-178
GGTTCTTAACAATCAGAAACTTGAAAACAA158CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
COT_ED_G03 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (NM_111817) putative adenosine kinase; protein id: At3g09820.1, supported by cDNA: gi_12017761, su
DT050774.1:135-155
GGTTCTTAACAATCAGAAACTTGAAAACAA135CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
GH_FFF_01-01-19R_H04_InvR_29Mar04_018_R.x fiber-five days after anthesis Gossypium hirsutum cDNA, mRNA sequence.
DW009499.1:132-152
GGTTCTTAACAATCAGAAACTTGAAAACAA132CAGTGGAGAGGAGATCAGGAAAGTGGAATACCTTTATTTAAATTCAGGCTT
GH_RTMF_14R_B04_InvR_02Aug04_030_R Root (free) - 3 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW237654.1:133-153
GGTTCTTAACAATCAGAAACTTGAAAACAA133CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
GH_RTMF_14R_B10_InvR_11Aug04_078_R Root (free) - 3 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW237663.1:75-95
GGTTCTTAACAATCAGAAACTTGAAAACAA75CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
rayctn0_0005_E12.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO089617.1:159-179
GGTTCTTAACAATCAGAAACTTGAAAACAA159CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
rayctn0_0023_A06.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO090968.1:347-367
GGTTCTTAACAATCAGAAACTTGAAAACAA347CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
rayctn0_0063_C12.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO094034.1:159-179
GGTTCTTAACAATCAGAAACTTGAAAACAA159CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
ps_01_H08.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO104331.1:159-179
GGTTCTTAACAATCAGAAACTTGAAAACAA159CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
rmhcyd0_000296.y1.scf cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO104606.1:160-180
GGTTCTTAACAATCAGAAACTTGAAAACAA160CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
rcrycc0_0003_C01.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO106776.1:174-194
GGTTCTTAACAATCAGAAACTTGAAAACAA174CAGTGGAGAGGAGATCAGGAAAGTGGACTATCTTTATTTAAATTCAGGCTT
rcrycc0_0044_A03.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO109831.1:156-176
GGTTCTTAACAATCAGAAACTTGAAAACAA156CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
rcrycc0_0053_A09.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO110592.1:173-193
GGTTCTTAACAATCAGAAACTTGAAAACAA173CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
B02_413747.14.S1104012493.anther-SP2990 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK695908.1:132-152
GGTTCTTAACAATCAGAAACTTGAAAACAA132CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
B01_51536.13.S1108222876.LDYN1-5293.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ111349.1:139-159
GGTTCTTAACAATCAGAAACTTGAAAACAA139CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
B02_51741.14.S1108272589.LDYN1-11438.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ111503.1:312-332
GGTTCTTAACAATCAGAAACTTGAAAACAA312CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
B05_51716.17.S1108264103.LDYN1-11153.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ111798.1:197-217
GGTTCTTAACAATCAGAAACTTGAAAACAA197CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
C04_51542.28.S1108222027.LDYN1-4444.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ112852.1:133-153
GGTTCTTAACAATCAGAAACTTGAAAACAA133CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
C04_51750.28.S1108273467.LDYN1-12316.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ112913.1:171-191
GGTTCTTAACAATCAGAAACTTGAAAACAA171CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
D01_51704.37.S1108262971.LDYN1-10021.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ113816.1:207-227
GGTTCTTAACAATCAGAAACTTGAAAACAA207CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
E05_51545.53.S1108222148.LDYN1-4565.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ115374.1:171-191
GGTTCTTAACAATCAGAAACTTGAAAACAA171CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
E10_51489.58.S1108193525.LDYN1-1978.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ115864.1:171-191
GGTTCTTAACAATCAGAAACTTGAAAACAA171CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
G02_51396.74.S1108173225.LDYN1-74.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ117465.1:171-191
GGTTCTTAACAATCAGAAACTTGAAAACAA171CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
Gossypioides kirkii chromosome KI_09.
CP032251.1:31651219-31651239
GGTTCTTAACAATCAGAAACTTGAAAACAA31651219CAGTGGAGAGGAGATCAGGAAAGCGGAATAGCTTATTTTAAACTCAGGCTT
Gossypium raimondii isolate D5-4 chromosome D5_09.
CP032561.1:35192156-35192176
GGGTTCTTAACAATCAGAAACTTGAAACAA35192156CAGTGGAGAGGAGATCAGGAAAGTGGACTAGCTTTATTTAAATTCAGGCTT
Gossypium herbaceum isolate GPA1alz chromosome 9.
CP106708.1:75534596-75534616
GGTTCTTAACAATCAGAAACTTGAAAACAA75534596CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
Gossypium bickii isolate GPG1lz chromosome 9.
CP106720.1:85196309-85196329
GGTTCTTAACAATCAGAAACTTGAAAACAA85196309CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
Gossypium rotundifolium isolate GPK201 chromosome 9.
CP106730.1:119711645-119711665
GGTTCTTAACAATCAGAAACTTGAAAACAA119711645CAGTGGAGAGGAGATCAGGAAAGTGGAATAGCTTTATTTAAATTCAGGCTT
Sequence 19869 from patent US 7557201.
GP488872.1:331-351
AAGCCTGAATTTAAATAAAGCTATTCCACT331TTCCTGATCTCCTCTCCACTGTTGTTTTCAAGTTTCTGATTGTTAAGAACC
BNLGHi7674 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (Y15430) adenosine kinase [Physcomitrella patens], mRNA sequence.
AI730683.1:440-460
AAGCCTGAATTTAAATAAAGCTATTCCACT440TTCCTGATCTCCTCTCCACTGTTGTTTTCAAGTTTCTGATTGTTAAGAACC
GA__Ea0008L19f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0008L19f, mRNA sequence.
BE055682.2:223-243
AAGCCTGAATTTAAATAAAGCTATTCCACT223TTCCTGATCTCCTCTCCACTGTTGTTTTCAAGTTTCTGATTGTTAAGAACC
GA__Eb0008G07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0008G07f, mRNA sequence.
BF270429.1:265-285
AAGCCTGAATTTAAATAAAGCTATTCCACT265TTCCTGATCTCCTCTCCACTGTTGTTTTCAAGTTTCTGATTGTTAAGAACC
GA__Eb0015M03f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0015M03f, mRNA sequence.
BF272730.1:688-708
AAGCCTGAATTTAAATAAAGCTATTCCACT688TTCCTGATCTCCTCTCCACTGTTGTTTTCAAGTTTCTGATTGTTAAGAACC
GA__Eb0016L22f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0016L22f, mRNA sequence.
BF273081.1:226-246
AGCCTGAATTTAAAATAAAGCTATTCCACT226TTCCTGATCTCCTCTCCACTGTTGTTTTCCAGTTTCTGATTGTTAAGAACC
GA__Eb0023D24f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0023D24f, mRNA sequence.
BF275144.1:77-97
AAGCCTGAATTTAAATAAAGCTATTCCACT77TTCCTGATCTCCTCTCCACTGTTGTTTTCAAGTTTCTGATTGTTAAGAACC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGTGGAGAGGAGATCAGGAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGTGGAGAGGAGATCAGGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
5.955 | 5.947 | search_plus_done; http://172.18.8.135:50400/match?q=CAGTGGAGAGGAGATCAGGAA&k=0&no_gap=0&offset=0&limit=50
7.361 | 1.406 | search_minus_done; http://172.18.8.135:50400/match?q=TTCCTGATCTCCTCTCCACTG&k=0&no_gap=0&offset=0&limit=6
7.366 | 0.005 | cgi_end;

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