GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 03:54:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2DU78JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EY935341.1:486-507
ACACGCATACCTTGCTTATACTCATATAAA486CATGACACACAAACATCCAACCCGTCTCCAAAACTCTAATAAACTGTGTACC
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:38553926-38553947
ACTCGCATACCTTGCTTATACTCATATAAA38553926CATGACACACAAACATCCAACCCGTCTCCAAAACTCTTATAAACTGTGTACC
RS2DU78TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY939401.1:373-394
GGTACACAGTTTATTAGAGTTTTGGAGACG373GGTTGGATGTTTGTGTGTCATGTTTATATGAGTATAAGCAAGGTATGCGTGT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:21383546-21383567
GGTACACAGTTTATTAGAGTTTTGGAGACG21383546GGTTGGATGTTTGTGTGTCATGTTTATATGAGTATAAGCAAGGTATGCGTGT
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:5064208-5064229
GGTACACAGTTTATAAGAGTTTTGGAGACG5064208GGTTGGATGTTTGTGTGTCATGTTTATATGAGTATAAGCAAGGTATGCGAGT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:21383546-21383567
GGTACACAGTTTATTAGAGTTTTGGAGACG21383546GGTTGGATGTTTGTGTGTCATGTTTATATGAGTATAAGCAAGGTATGCGTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATGACACACAAACATCCAACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATGACACACAAACATCCAACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.178 | 0.169 | search_plus_done; http://172.18.8.135:50400/match?q=CATGACACACAAACATCCAACC&k=0&no_gap=0&offset=0&limit=50
0.265 | 0.087 | search_minus_done; http://172.18.8.135:50400/match?q=GGTTGGATGTTTGTGTGTCATG&k=0&no_gap=0&offset=0&limit=48
0.268 | 0.003 | cgi_end;

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