GGGenome | Results

2025-04-10 20:46:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

LJSB41F LIB-EST LJSB (Longjing 43 sprouting buds) Camellia sinensis subtractive cDNA library Camellia sinensis cDNA clone SB41, mRNA sequence.
JZ486019.1:320-345

AATGTGAGTGAACTTCTCATATAGTTTGTC320CATGATTTCATGTCCAAACTGGTTTGAAATTATAGGCTCTGTGAAGGCCCTGGCAA

LJSB42F LIB-EST LJSB (Longjing 43 sprouting buds) Camellia sinensis subtractive cDNA library Camellia sinensis cDNA clone SB42, mRNA sequence.
JZ486029.1:305-330

AATGTGAGTGAACTTCTCATATAGTTTGTC305CATGATTTCATGTCCAAACTGGTTTGAAATTATAGGCTCTGTGAAGGCCCTGGCAA

ZDSB111F LIB-EST ZDSB (Zhenghe Dabaicha sprouting buds) Camellia sinensis subtractive cDNA library Camellia sinensis cDNA clone ZDSB111, mRNA sequence.
JZ494886.1:312-337

AATGGGAGTGAATTTGTCATATAGTTTGTC312CATGATTTCATGTCCAAACTGGTTTGAAATTATAGGCTCTGTGAAGGCCCCGACAA

ZDSB28F LIB-EST ZDSB (Zhenghe Dabaicha sprouting buds) Camellia sinensis subtractive cDNA library Camellia sinensis cDNA clone ZDSB28, mRNA sequence.
JZ495071.1:429-454

AATGTGAGTGAACTTCTCATATAGTTTGTC429CATGATTTCATGTCCAAACTGGTTTGAAATTATAGGCTCTGTGAAGGCCCTGGCAA

TSA: Camellia sinensis tea_rep_c691 mRNA sequence.
KA280133.1:358-383

AATGTGAGTGAACTTCTCATATAGTTTGTC358CATGATTTCATGTCCAAACTGGTTTGAAATTATAGGCTCTGTGAAGGCCCTGGCAA

TSA: Camellia sinensis tea_rep_c5989 mRNA sequence.
KA285393.1:407-432

AATGTGAGTGAACTTCTCATATAGTTTGTC407CATGATTTCATGTCCAAACTGGTTTGAAATTATAGGCTCTGTGAAGGCCCTGGCAA

TSA: Camellia sinensis tea_s24362 mRNA sequence.
KA302720.1:52-77

AATGTGAGTGAACTTCTCATATAGTTTGTC52CATGATTTCATGTCCAAACTGGTTTGAAATTATAGGCTCTGTGAAGGCCCTGGCAA

TSA: Camellia sinensis tea_s24588 mRNA sequence.
KA302939.1:153-178

AATGTGAGTGAATTTTTCATATAGTTTGTC153CATGATTTCATGTCCAAACTGGTTTGAAAAAACCACCACGGAGGCGAAGGACAAGA

JP 2002085072-A/17: Gene encoding caffein synthetic system-related enzyme and utilization thereof.
BD134669.1:1062-1087

TTGCCAGGGCCTTCACAGAGCCTATAATTT1062CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGAGAAGTTCACTCACATT

JP 2003088373-A/1: A Caffeine Synthase and A Gene thereof.
BD285420.1:1039-1064

TGGTCAGGGCCTTCACAGAGCCTATAATTT1039CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAATTCACTCACATT

JP 2003088373-A/2: A Caffeine Synthase and A Gene thereof.
BD285421.1:1039-1064

TGGTCAGGGCCTTCACAGAGCCTATAATTT1039CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAATTCACTCACATT

Camellia sinensis mRNA, clone: TB01F06, 5' end sequence, expressed in terminal buds.
FS954434.1:122-147

TTGCCAGGGCCTTCACAGAGCCTATAATTT122CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGAGAAGTTCACTCACATT

ZYta110 Young leaves cDNA library of tea plant (Camellia sinensis) Camellia sinensis cDNA 5', mRNA sequence.
GH159040.1:541-566

TTGTCAGGGCCTTCACAGAGCCTATAATTT541CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAATTCACTCACATT

SSH1_70_TRA_17 Camellia assamica BWSSH1TFL cDNA library Camellia sinensis var. assamica cDNA 5', mRNA sequence.
HS395577.1:264-289

TTGCCAGGGCCTTCACAGAGCCTATAATTT264CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGAGAAGTTCACTCACATT

SSH2_253_TRA_637 Camellia assamica BWSSH2TFL cDNA library Camellia sinensis var. assamica cDNA 5', mRNA sequence.
HS396197.1:180-205

TTGCCAGGGCCTTCACAGAGCCTATAATTT180CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGAGAAGTTCACTCACATT

SKD_153_TRA_4865 Camellia assamica SKDCC1 cDNA library Camellia sinensis var. assamica cDNA 5', mRNA sequence.
HS398211.1:575-600

TTGCCAGGGCCTTCACAGAGCCTATAATTT575CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGAGAAGTTCACTCACATT

S5_P5C10_009_TRA_4641 Camellia assamica S5 cDNA library Camellia sinensis var. assamica cDNA 5', mRNA sequence.
HS399890.1:173-198

TTGCCAGGGCCTTCACAGAGCCTATAATTT173CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGAGAAGTTCACTCACATT

Tea016_2005-10-31_1/Tea016_G07_026_1 Camellia sinensis (tea) cultivar DT1 EST library Camellia sinensis cDNA, mRNA sequence.
JK479318.1:81-106

TGGTCAGGGCCTTCACAGAGCCTATAATTT81CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAATTCACTCACATT

TSA: Camellia sinensis tea_rep_c1123 mRNA sequence.
KA280564.1:1555-1580

TGGTCAGGGCCTTCACAGAGCCTATAATTT1555CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACGAATTCACTCACATT

TSA: Camellia sinensis tea_rep_c15113 mRNA sequence.
KA294360.1:1020-1045

TTGCCAGGGCCTTCACAGAGCCTATAATTT1020CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGAGAAGTTCACTCACATT

TSA: Camellia sinensis tea_rep_c22588 mRNA sequence.
KA301058.1:1030-1055

TGGTCAGGGCCTTCACAGAGCCTATAATTT1030CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGAAAAATTCACTCACATT

Camellia sinensis clone U10BcDNA 2453 caffeine synthase mRNA, partial cds.
HM003356.1:305-330

TTGCCAGGGCCTTCACAGAGCCTATAATTT305CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGAGAAGTTCACTCACATT

Camellia sinensis TCS2 mRNA for caffeine synthase, complete cds.
AB031281.1:1062-1087

TTGCCAGGGCCTTCACAGAGCCTATAATTT1062CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGAGAAGTTCACTCACATT

Camellia irrawadiensis ICS1 mRNA for theobromine synthase, complete cds.
AB056108.1:1039-1064

TGGTCAGGGCCTTCACAGAGCCTATAATTT1039CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAATTCACTCACATT

Camellia irrawadiensis ICS2 mRNA for theobromine synthase, complete cds.
AB207816.1:975-1000

TTGCCAGGGCCTTCACAGAGCCTATAATTT975CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGAGAAGTTCACTCACATT

Camellia ptilophylla PCS2 mRNA for theobromine synthase, complete cds.
AB207818.1:975-1000

TTGCCAGGGCCTCCACAGAGCCTATAATTT975CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGAGAAGTTCACTCACATT

Camellia japonica CjCS1 mRNA for theobromine synthase, complete cds.
AB297451.1:1014-1039

CTATCAGGGCCTTCACAGAGCCTATAATCT1014CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAGTTCACTCACATT

Camellia granthamiana CgCS2 mRNA for theobromine synthase, complete cds.
AB362883.1:1014-1039

CTGTCAGGGCCTTCACAGAACCTATAATCT1014CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAGTTCACTCACATT

Camellia kissii CkCS1 mRNA for theobromine synthase, complete cds.
AB362884.1:965-990

CTATCAGGGCCTTCACAGAGCCTATAATCT965CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAGTTCACTCACATT

Camellia petelotii CcCS2 mRNA for theobromine synthase, complete cds.
AB362886.1:986-1011

CTATCAGGGCCTTTACAGAGCCTATAATCT986CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAGTTCACTCACATT

Camellia sinensis caffeine synthase mRNA, complete cds.
AY907710.1:968-993

TTGCCAGGGCCTTCACAGAGCCTATAATTT968CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGAGAAGTTCACTCACATT

Camellia sinensis caffeine synthase gene, complete cds.
EF526217.1:6314-6339

TTGTCAGGGCCTTCACAGAGCCTATAATTT6314CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAATTCACTCACATT

Camellia sinensis caffeine synthase 1 (TCS1) gene, complete cds.
JX647690.1:6771-6796

TTGTCAGGGCCTTCACAGAGCCTATAATTT6771CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAATTCACTCACATT

Camellia sinensis caffeine synthase 2 (TCS2) gene, complete cds.
JX647691.1:6130-6155

TTGCCAGGGCCTTCACAGAGCCTATAATTT6130CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGAGAAGTTCACTCACATT

Camellia sinensis caffeine synthase 4 (TCS4) gene, complete cds.
JX647693.1:5892-5917

CTGTCAGGGCCTTCACAGAGCCTATAATCT5892CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAGTTCACTCACATT

Camellia sinensis caffeine synthase 5 (TCS5) gene, complete cds.
JX647694.1:5202-5227

CTGTCAGGGCCTTCACAGAGCCTATAATCT5202CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAGTTCACTTACATT

Camellia sinensis caffeine synthase mRNA, complete cds.
KT215397.1:977-1002

TTGTCAGGGCCTTCACAGAGCCTATAATTT977CAAACCAGTTTGGACATGAAATCATGGGCAAACTATATGACAAATTCACTCACATT

Camellia crassicolumna caffeine synthase mRNA, complete cds.
KT215398.1:980-1005

TTGTCAGGGCCTTCACAGAGCCTATAATTT980CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAATTCACTCACATT

Camellia taliensis caffeine synthase mRNA, complete cds.
KT215399.1:980-1005

TTGTCAGGGCCTTCACAGAGCCTATAATTT980CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAATTCACTCACATT

Camellia sinensis var. assamica theobromine synthase (CkTbS) mRNA, complete cds.
MN163830.1:983-1008

TGGTCAGGGCCTTCACAGAGCCTATAATTT983CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAATTCACTCACATT

Camellia sinensis var. assamica theacrine synthase (CkTcS) mRNA, complete cds.
MN163831.1:983-1008

TTGTCAGGGCCTTCACAGAGCCTATAATTT983CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAATTCACTCACATT

Camellia gymnogyna theacrine synthase (GCS1) mRNA, complete cds.
ON411345.1:983-1008

TTGTCAGGGCCTTCACAGAGCCTATAATTT983CAAACCAGTTTGGACATGAAATCATGGACAAACTATATGACAAATTCACTCACATT

Data Export:

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Debug Info:

0.008 | 0.008 | search_start;
0.554 | 0.545 | search_plus_done; http://172.18.8.135:50400/match?q=CATGATTTCATGTCCAAACTGGTTTG&k=0&no_gap=0&offset=0&limit=50
1.303 | 0.749 | search_minus_done; http://172.18.8.135:50400/match?q=CAAACCAGTTTGGACATGAAATCATG&k=0&no_gap=0&offset=0&limit=42
1.325 | 0.022 | cgi_end;

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