GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 07:58:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pyrus x bretschneideri Unigene75655_XinShao mRNA sequence.
JR661058.1:277-296
TTCTGCAGGAGCAAGGGGGACATTGAGGAC277CATGGGATCTTGGCAGCAAAGTGTTTTGTCCAAACACCGCCCTCATTATT
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:26532757-26532776
TAGTGCAGGAACAAGCGGGACATTGAGAAC26532757CATGGGATCTTGGCAGCAAAGTGTTTTGTCCAAACACCACCAGAATCATC
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:26582222-26582241
TAGTGCAGGAACAAGCGGGACATTGAGAAC26582222CATGGGATCTTGGCAGCAAAGTGTTTTGTCCAAACACCACCAGAATCATC
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:18549278-18549297
TTCTGCAGGAGCAAGGGGGACATTGAGAAC18549278CATGGGATCTTGGCAGCAAAGTGTTTTGTCCAAACACCGCCCTCATTATT
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:18557231-18557250
TTCTGCAGGAGCAAGGGGGACATTGAGAAC18557231CATGGGATCTTGGCAGCAAAGTGTTTTGTCCAAACACCGCCCTCATTATT
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:18565348-18565367
TTCTGCAGGAGCAAGGGGGACATTGAGAAC18565348CATGGGATCTTGGCAGCAAAGTGTTTTGTCCAAACACCGCCCTCATTATT
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:18589628-18589647
TTCTGCAGGAGCAAGGGGGACATTGAGAAC18589628CATGGGATCTTGGCAGCAAAGTGTTTTGTCCAAACACCGCCCTCATTATT
TSA: Pyrus communis mRNA, contig: lc48636.
FX654933.1:258-277
AATAATGAGGGCGGTGTTTGGACAAAACAC258TTTGCTGCCAAGATCCCATGGTTCTCAATGTCCCCCTTGCTCCTGCAGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATGGGATCTTGGCAGCAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATGGGATCTTGGCAGCAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.122 | 0.113 | search_plus_done; http://172.18.8.135:50400/match?q=CATGGGATCTTGGCAGCAAA&k=0&no_gap=0&offset=0&limit=50
0.157 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGCTGCCAAGATCCCATG&k=0&no_gap=0&offset=0&limit=43
0.157 | 0.001 | cgi_end;

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