GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 16:20:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CM095D06 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR461249.1:250-272
ATATCAAAAGTTTAGTGCAACCCCAAAATA250CATGGTTTACAATTAACCCAAAATTTGGTGCCACTCTCAACTCGTAAAACACA
GH_TMIRS_212_H03 Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW517591.1:111-133
ATATCAAAAGTTTACTGCAACCCCAAAATA111CATGGTTTACAATTAACCCAAAATTTGGTGCCACTCTCAACTCGTAAAACACA
EST008944 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 40-M11 5', mRNA sequence.
GR715744.1:681-703
ATATCAAAAGTTTAGTGCAACCCCAAAATA681CATGGTTTACAATTAACCCAAAATTTGGTGCCACTCTCTCAACTCGTAAAACA
cembAJ236 Construction of cDNA library from roots of Gossypium arboreum Gossypium arboreum cDNA clone CI02362B1D236 3', mRNA sequence.
JK757321.1:391-413
ATATCAAAAGTTTAGTGCAACCCCAAAATA391CATGGTTTACAATTAACCCAAAATTTGGTGCCACTCTCTCAACTCGTAAAACA
cembAJ350 Construction of cDNA library from roots of Gossypium arboreum Gossypium arboreum cDNA clone CI03506A1E350 3', mRNA sequence.
JK757435.1:392-414
ATATCAAAAGTTTAGTGCAACCCCAAAATA392CATGGTTTACAATTAACCCAAAATTTGCTGCCACTCTCTCAACTCGTAAAACA
B07-105B07 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK793064.1:610-632
ATATCAAAAGTTTAGTGCAACCCCAAAATA610CATGGTTTACAATTAACCCAAAATTTGGTGCCACTCTCTCAACTCGTAAAACA
Gossypium herbaceum isolate Zhongcao1 chromosome 10.
CP106689.1:4827606-4827628
ATATCAAAAGTTTAGTGCAACCCCAAAATA4827606CATGGTTTACAATTAACCCAAAATTTGGTGCCACTCTCTCAACTCGTAAAACA
GA__Ea0033F02f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0033F02f, mRNA sequence.
BE052517.2:318-340
TGTTTTACGAGTTGAGAGAGTGGCACCAAA318TTTTGGGTTAATTGTAAACCATGTATTTTGGGGTTGCACTAAACTTTTGATAT
GA__Ea0007I11r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0007I11r, mRNA sequence.
BM358306.1:267-289
TGTTTTACGAGTTGAGAGAGTGGCACCAAA267TTTTGGGTTAATTGTAAACCATGTATTTTGGGGTTGCACTAAACTTTTGATAT
GR__Ea01I23.r GR__Ea Gossypium raimondii cDNA clone GR__Ea01I23 3', mRNA sequence.
CO084769.1:96-118
TGTTTTACGAGTTGAGAGAGTGGCACCAAA96TTTTGGGTTAATTGTAAACCATGTATTTTGGGGTTGCACTAAACTTTTGATAT
GR__Eb023D02.f GR__Eb Gossypium raimondii cDNA clone GR__Eb023D02 5', mRNA sequence.
CO119965.1:113-135
TGTTTTACGAGTTGAGAGAGTGGCACCAAA113TTTTGGGTTAATTGTAAACCATGTATTTTGGGGTTGCACTAAACTTTTGATAT
G01_425264.73.S1104112744.anther-SP9385 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK702005.1:242-264
TGTGTTTTACGAGTTGAGAGTGGCACCAAA242TTTTGGGTTAATTGTAAACCATGTATTCTGGGGTTGCACTAAACTTTTGATAT
H02_422072.86.S1104082373.anther-SP5750 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK703367.1:242-264
TGTGTTTTACGAGTTGAGAGTGGCACCAAA242TTTTGGGTTAATTGTAAACCATGTATTTTGGGGTTGCACTAAACTTTTGATAT
A08_51603.8.S1108242123.LDYN1-7496.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ110871.1:242-264
TGTGTTTTACGAGTTGAGAGTGGCACCAAA242TTTTGGGTTAATTGTAAACCATGTATTTTGGGGTTGCACTAAACTTTTGATAT
Gossypium raimondii isolate D5-4 chromosome D5_10.
CP032562.1:58076244-58076266
TGTTTTACGAGTTGAGAGAGTGGCACCAAA58076244TTTTGGGTTAATTGTAAACCATGTATTTTGGGGTTGCACTAAACTTTTGATAT
Gossypium turneri isolate D10-2 chromosome D10_10.
CP032580.1:59760593-59760615
TGTTTTACGAGTTGAGAGAGTGGCACCAAA59760593TTTTGGGTTAATTGTAAACCATGTATTTTGGGGTTGCACTAAACTTTTGATAT
Gossypium herbaceum isolate GPA1alz chromosome 10.
CP106701.1:117587949-117587971
TGTTTTACGAGTTGAGAGAGTGGCACCAAA117587949TTTTGGGTTAATTGTAAACCATGTATTTTGGGGTTGCACTAAACTTTTGATAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATGGTTTACAATTAACCCAAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATGGTTTACAATTAACCCAAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.541 | 0.532 | search_plus_done; http://172.18.8.135:50400/match?q=CATGGTTTACAATTAACCCAAAA&k=0&no_gap=0&offset=0&limit=50
0.938 | 0.397 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTGGGTTAATTGTAAACCATG&k=0&no_gap=0&offset=0&limit=43
0.945 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).