GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 10:43:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2310529-2310548
ATTCGTTAACTATTCTACATCAGACTATTG2310529CATTGATGCTCAGACGCTACTTTCTAGGAAGAGTGCAAGGGTTGTAATTC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2332694-2332713
ATTCGTTAACTATTCTACATCAGACTATTG2332694CATTGATGCTCAGACGCTACTTTCTAGGAAGAGTGCAAGGGTTGTAATTC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2427789-2427808
ATTCGTTAACTATTCTACATCAGACTATTG2427789CATTGATGCTCAGACGCTACTTTCTAGGAAGAGTGCAAGGGTTGTAATTC
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2485270-2485289
ATTCGTTAACTATTCTACATCAGACTATTG2485270CATTGATGCTCAGACGCTACTTTCTAGGAAGAGTGCAAGGGTTGTAATTC
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2540989-2541008
ATTCGTTAACTATTCTACATCAGACTATTG2540989CATTGATGCTCAGACGCTACTTTCTAGGAAGAGTGCAAGGGTTGTAATTC
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2576586-2576605
ATTCGTTAACTATTCTACATCAGACTATTG2576586CATTGATGCTCAGACGCTACTTTCTAGGAAGAGTGCAAGGGTTGTAATTC
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2540126-2540145
ATTCGTTAACTATTCTACATCAGACTATTG2540126CATTGATGCTCAGACGCTACTTTCTAGGAAGAGTGCAAGGGTTGTAATTC
Platycnemis pennipes genome assembly, chromosome: 2.
OW121848.1:149008721-149008740
TTCTGAATGAAGTTTAAAGGCAGTTCACAG149008721GTAGCGTCTGAGCATCAATGGCGAACGACCTACCCGTCGACTGGGGGACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATTGATGCTCAGACGCTAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATTGATGCTCAGACGCTAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.100 | 0.090 | search_plus_done; http://172.18.8.135:50400/match?q=CATTGATGCTCAGACGCTAC&k=0&no_gap=0&offset=0&limit=50
0.119 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=GTAGCGTCTGAGCATCAATG&k=0&no_gap=0&offset=0&limit=43
0.120 | 0.001 | cgi_end;

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