GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 21:36:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lotus japonicus genomic DNA, chromosome 3, clone: LjT14C19, TM0190.
AP006105.1:45880-45899
TGAATGAATGTAAGTTGTTTTACTTATTCT45880TTGCATTAGTGGAAGTTTGGTTTAGTTTACTTATTCTTTGAATTATATTA
Lotus japonicus B-129 DNA, chromosome 3, complete sequence.
AP022631.1:19636697-19636716
TGAATGAATGTAAGTTGTTTTACTTATTCT19636697TTGCATTAGTGGAAGTTTGGTTTAGTTTACTTATTCTTTGAATTATATTA
Agriopis aurantiaria genome assembly, chromosome: 13.
OU611994.1:13516350-13516369
TAAAGGGTCCTTCAGATTATATAGAGGTGT13516350TTGCATTAGTGGAAGTTTGGAACTGGTTAACGAGACTGCTGGTTGTTTTA
Dasysyrphus tricinctus genome assembly, chromosome: 1.
OY992530.1:165301258-165301277
ATATTCAATTATTGAGTGACAAAAATTGAA165301258TTGCATTAGTGGAAGTTTGGTAGGATACCTACATATTTTTTATATCTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCAAACTTCCACTAATGCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAAACTTCCACTAATGCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.095 | 0.086 | search_plus_done; http://172.18.8.135:50400/match?q=CCAAACTTCCACTAATGCAA&k=0&no_gap=0&offset=0&limit=50
0.122 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=TTGCATTAGTGGAAGTTTGG&k=0&no_gap=0&offset=0&limit=50
0.125 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).