GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 06:59:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOGTG32TF BOGT Brassica oleracea genomic clone BOGTG32, genomic survey sequence.
BH543628.1:523-548
TTTTTGCAGTGATCTTGTTAAATCGGTTAT523CCAAGGTTTTCTTCCTGGGATCGTGTTAAAGCTCTTTATAATATTTCTGCCAAGCA
BONHA56TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONHA56, genomic survey sequence.
BZ443448.1:452-477
TTTTTGCAGTGATCTTGTTAAATCGGTTAT452CCAAGGTTTTCTTCCTGGGATCGTGTTAAAGCTCTTTATAATATTTCTGCCAAGCA
Brassica napus genome assembly, chromosome: C05.
HG994369.1:6011425-6011450
TTTTTGCAGTGATCTTGTTAAATCGGTTAT6011425CCAAGGTTTTCTTCCTGGGATCGTGTTAAAGCTCTTTATAATATTTCTGCCAAGCA
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:5881367-5881392
TTTTTGCAGTGATCTTGTTAAATCGGTTAT5881367CCAAGGTTTTCTTCCTGGGATCGTGTTAAAGCTCTTTATAATATTTCTGCCAAGCA
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:53304021-53304046
TGCTTGGCAGAAATATTATAAAGAGCTTTA53304021ACACGATCCCAGGAAGAAAACCTTGGATAACCGATTTAACAAGATCACTGCAAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCAAGGTTTTCTTCCTGGGATCGTGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAAGGTTTTCTTCCTGGGATCGTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.113 | 0.104 | search_plus_done; http://172.18.8.135:50400/match?q=CCAAGGTTTTCTTCCTGGGATCGTGT&k=0&no_gap=0&offset=0&limit=50
0.131 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=ACACGATCCCAGGAAGAAAACCTTGG&k=0&no_gap=0&offset=0&limit=46
0.132 | 0.001 | cgi_end;

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