GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 18:17:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Echeneis naucrates genome assembly, chromosome: 5.
LR584046.1:19128636-19128655
ACTTGCTGCACTTGCTTTGTCAGTTTGAAG19128636CCACAACTGTCAAAGATTATGCAATACTTAGGGAAGAAGTTGATCTTGAA
NDL1_24_B09.g1_A029 Needles control Pinus taeda cDNA clone NDL1_24_B09_A029 5', mRNA sequence.
CO171775.1:11-30
GGCCATTTTA11CCACAACTGTCAAAGATTATTGAATACAAAACAACTGTTACTGAATTTAC
Athalia cordata genome assembly, chromosome: 1.
OZ010625.1:30859426-30859445
TTAGGAAAGAGGAATCGTAGTCAGATTATT30859426CCACAACTGTCAAAGATTATGTAACTTATTATTCATAATTGATAGATTAT
Poecilus cupreus genome assembly, chromosome: 14.
OZ012727.1:17036512-17036531
TATTGAGAGGTGTTGGATAAAATTGTTTAT17036512CCACAACTGTCAAAGATTATACCCATAATTCAACAGTTGTTTATCAATTA
RTWW2_3_F02.b2_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_3_F02_A021 3', mRNA sequence.
CF473516.1:672-691
GTAAATTCAGTAACAGTTGTTTTGTATTCA672ATAATCTTTGACAGTTGTGGT
RTS1_1_B10.b1_A029 Roots minus sulfur Pinus taeda cDNA clone RTS1_1_B10_A029 3', mRNA sequence.
DR109964.1:732-751
GTAAATTCAGTAACAGTTGTTTTGTATTCA732ATAATCTTTGACAGTTGTGGTAAAATGGCCATGTACTACTTTTCTAAA
Aphrocallistes beatrix genome assembly, chromosome: 2.
OY725489.1:4068889-4068908
TTTGGGGTTTTCGTCGATTACTCCTGGACT4068889ATAATCTTTGACAGTTGTGGACATAGTTTTAATTTGGTTGTTGTGGCGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCACAACTGTCAAAGATTAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCACAACTGTCAAAGATTAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.124 | 0.116 | search_plus_done; http://172.18.8.135:50400/match?q=CCACAACTGTCAAAGATTAT&k=0&no_gap=0&offset=0&limit=50
0.201 | 0.077 | search_minus_done; http://172.18.8.135:50400/match?q=ATAATCTTTGACAGTTGTGG&k=0&no_gap=0&offset=0&limit=46
0.203 | 0.002 | cgi_end;

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