GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 08:37:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus x robusta genome assembly, chromosome: 12.
OY720336.1:4355929-4355948
TTTCTGATAACACATGACAGAAATTTGAAT4355929CCACCGCTTTTCTAAGGAGCACTTCGCGCATCAGATCATGGACTCGACAG
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:4386652-4386671
TTTCTGATAACACATGACAGAAATTTGAAT4386652CCACCGCTTTTCTAAGGAGCACTTCGCGCATCAGATCATGGACTCGACAG
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:3319182-3319201
TTTCTGATAACACATAACAGAAATTTGAAT3319182CCACCGCTTTTCTAAGGAGCACTTCACGCATCAGATCATGGACTCGACAG
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:40129479-40129498
CTGTCGAGTCCATGATCTGATGCGCGAAGT40129479GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:40158646-40158665
CTGTCGAGTCCATGATCTGATGCGCGAAGT40158646GCTCCTTAGAAAAGCGGTGGATTCAAATTTATGTCATGTGTTATGAGAAA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:29590481-29590500
CTGTCGAGTCCATGATCTGATGCGCGAAGT29590481GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:29627564-29627583
CTGTCGAGTCCATGATCTGATGCACGAAGT29627564GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:27948648-27948667
CTGTCGAGTCCATGATCTGATGCGCGAAGT27948648GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:27972497-27972516
CTGTCGAGTCCATGATCTGATGCGCGAAGT27972497GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:29572283-29572302
CTGTCGAGTCCATGATCTGATGCGCGAAGT29572283GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:29235578-29235597
CTGTCGAGTCCATGATCTGATGCGCGAAGT29235578GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:29268754-29268773
CTGTCGAGTCCATGATCTGATGCGCGAAGT29268754GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:27964124-27964143
CTGTCGAGTCCATGATCTGATGCGCGAAGT27964124GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCGGAAA
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:25949172-25949191
CTGTCGAGTCCATGATCTGATGCGCGAAGT25949172GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:25978104-25978123
CTGTCGAGTCCATGATCTGATGCGCGAAGT25978104GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus domestica genome assembly, chromosome: 1.
OU696677.1:25983567-25983586
CTGTCGAGTCCATGATCTGATGCGCGAAGT25983567GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus domestica genome assembly, chromosome: 1.
OU696677.1:26004635-26004654
CTGTCAAGTCCATGATCTGATGCGTTAAGT26004635GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGCGTTATCAGAAA
Malus domestica genome assembly, chromosome: 1.
OU696677.1:26069023-26069042
CTGTCGAGTCCATGATCTGATGCGCGAAGT26069023GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29754753-29754772
CTGTCGAGTCCATGATCTGATGCGCGAAGT29754753GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29783685-29783704
CTGTCGAGTCCATGATCTGATGCGCGAAGT29783685GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus domestica genome assembly, chromosome: 1.
OU744953.1:29157971-29157990
CTGTCGAGTCCATGATCTGATGCGCGAAGT29157971GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus domestica genome assembly, chromosome: 1.
OU744991.1:26228421-26228440
CTGTCGAGTCCATGATCTGATGCGCGAAGT26228421GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA
Malus domestica genome assembly, chromosome: 1.
OU744991.1:26257359-26257378
CTGTCGAGTCCATGATCTGATGCGCGAAGT26257359GCTCCTTAGAAAAGCGGTGGATTCAAATTTCTGTCATGTGTTATCAGAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCACCGCTTTTCTAAGGAGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCACCGCTTTTCTAAGGAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.093 | 0.084 | search_plus_done; http://172.18.8.135:50400/match?q=CCACCGCTTTTCTAAGGAGC&k=0&no_gap=0&offset=0&limit=50
0.115 | 0.022 | search_minus_done; http://172.18.8.135:50400/match?q=GCTCCTTAGAAAAGCGGTGG&k=0&no_gap=0&offset=0&limit=47
0.129 | 0.014 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).