GGGenome | Results

2025-04-14 03:19:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

UCRCS04_2_008E11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_E11, mRNA sequence.
CV884620.1:487-506

TTTTTGCTTCCACGTCGCCGTTTAGATGCT487CCACCTCCGCTTCGTAATAACCGTTGGGCAGGGTGCCAGCGTCACACGCG

UCRCS04_2_008E11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_E11, mRNA sequence.
CV884621.1:169-188

CGCGTGTGACGCTGGCACCCTGCCCAACGG169TTATTACGAAGCGGAGGTGGAGCATCTAAACGGCGACGTGGAAGCAAAAA

Citrus sinensis mRNA, clone: VS27V39, 5'-end sequence, expressed in seed.
DC900122.1:186-205

CGCGTGTGACGCTGGCACCCTGCCCAACGG186TTATTACGAAGCGGAGGTGGAGCATCTAAACGGCGACGTGGAAGCAAAAA

UCRCA01_03O16_r Bark of Madame Vinous Sweet Orange Scion on Standard Sour Orange Rootstock, Citrus Tristeza Virus Challenged - UCRCA01 Citrus aurantium cDNA clone CA_SEa0003O16, mRNA sequence.
DN623697.1:188-207

CGCGTGTGACGCTGGCACCCTGCCCAACGG188TTATTACGAAGCGGAGGTGGAGCATCTAAACGGCGACGTGGAAGCAAAAA

Volcani_8_01_C11 Volcani08 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
EX448548.1:237-256

CGCGTGTGACGCTGGCACCCTGCCCAACGG237TTATTACGAAGCGGAGGTGGAGCATCTAAACGGCGACGTGGAAGCAAAAA

CR05-C1-100-083-C02-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequence.
EY765318.1:196-215

CGCGTGTGACGCTGGCACCCTGCCCAACGG196TTATTACGAAGCGGAGGTGGAGCATCTAAACGGCGACGTGGAAGCAAAAA

IC0AAA13CE09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA13CE09, mRNA sequence.
FC912829.1:199-218

CGCGTGTGACGCTGGTACCCTGCCCAACGG199TTATTACGAAGCGGAGGTGGAGCATCTAAACGGCGACGTGGAAGCAAAAA

Citrus sinensis genome assembly, chromosome: 5.
OY754322.1:33239010-33239029

CGCGTGTGACGCTGGTACCCTGCCCAACGG33239010TTATTACGAAGCGGAGGTGGAGCATCTAAACGGCGACGTGGAAGCAAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.131 | 0.122 | search_plus_done; http://172.18.8.135:50400/match?q=CCACCTCCGCTTCGTAATAA&k=0&no_gap=0&offset=0&limit=50
0.412 | 0.281 | search_minus_done; http://172.18.8.135:50400/match?q=TTATTACGAAGCGGAGGTGG&k=0&no_gap=0&offset=0&limit=49
0.417 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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