GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 14:18:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Delphinus delphis genome assembly, chromosome: 10.
OX465336.1:3423131-3423150
ATGCCACATTTCTTCTTACTTTATTCCATA3423131CCACCTTCTTTCCCACAAAACATTCCTGTGTCCCAAAAGGGTTCTTTTTC
Stenella coeruleoalba genome assembly, chromosome: 10.
OX596395.1:29232815-29232834
ATGCCACATTTTTTCTTACTTTATTCCATA29232815CCACCTTCTTTCCCACAAAACATTCCTGTGTCCCAAAAGGGTTCTTTTTC
Erithacus rubecula genome assembly, chromosome: 3.
LR812105.2:42087180-42087199
GTTGTTTTCCATTAAAACTGGGTCTTGAAA42087180CCACCTTCTTTCCCACAAAATGCAGGAGCACCTGGAGGTCAGGACATGGC
Erithacus rubecula genome assembly, chromosome: 7.
LR812109.1:42087180-42087199
GTTGTTTTCCATTAAAACTGGGTCTTGAAA42087180CCACCTTCTTTCCCACAAAATGCAGGAGCACCTGGAGGTCAGGACATGGC
Dianthus caryophyllus mRNA, clone: CES08F15, 5' end sequence.
FY385257.1:92-111
TTCCTCACTCATTCTTTCTCTCTCCAAAAC92CCACCTTCTTTCCCACAAAATCCCTTCAATTCCTCAAACCAACCACCGTG
Dianthus caryophyllus mRNA, clone: CES12E21, 5' end sequence.
FY386751.1:106-125
TTCCTCACTCATTCTTCCTCTCTCCAAAAC106CCACCTTCTTTCCCACAAAATCCCTTCAATTCCTCAAACCAACCACCGTA
TSA: Dianthus caryophyllus mRNA, contig: CAK09.695.C1.
FX297987.1:176-195
TTCCTCACTCATTCTTCCTCTCTCCAAAAC176CCACCTTCTTTCCCACAAAATCCCTTCAATTCCTCAAACCAACCACCGTA
TSA: Dianthus caryophyllus mRNA, contig: CAK09.695.C2.
FX297988.1:172-191
TTCCTCACTCATTCTTTCTCTCTCCAAAAC172CCACCTTCTTTCCCACAAAATCCCTTCAATTCCTCAAACCAACCACCGTG
Capsicum annuum Takanotsume DNA, chromosome 2, sequence.
AP026697.1:101458891-101458910
GAAGAGTAATAAATAGTAAATAATAAGTAT101458891CCACCTTCTTTCCCACAAAAGTTGATCCAGCCACCAACTCCAAAGATAGA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 2.
CP124730.1:102129612-102129631
GAAGAGTAATAAATAGTAAATAATAAGTAT102129612CCACCTTCTTTCCCACAAAAGTTGATCCAGCCACCAACTCCAAAGATAGA
Solanum pennellii chromosome ch05, complete genome.
HG975444.1:34592500-34592519
ACTAAGAAAGTTGTCCCTATGCCTAGACCT34592500CCACCTTCTTTCCCACAAAAGTTAGTGAAGAAGACTGAAGAATAAAAATA
Hypomecis punctinalis genome assembly, chromosome: 22.
OX438816.1:4251267-4251286
TTTTCGATTCCATGATCGTTGTGAAATTGG4251267CCACCTTCTTTCCCACAAAATTGAGTCTCCGTATCAATCAGTAGGTTATC
Orcinus orca genome assembly, chromosome: 10.
OW443370.1:78352644-78352663
GAAAAAGAACCCTTTTGGGACACAGGAATG78352644TTTTGTGGGAAAGAAGGTGGTATGGAATAAAGTAAGAAGAAATGTGGCAT
Hyperoodon ampullatus genome assembly, chromosome: 10.
OX457065.1:78585542-78585561
GAAAAAGAACCCTTTTGGGACACAGGAATG78585542TTTTGTGGGAAAGAAGGTGGTATGGAATAAAGTAAGAAGAAATGTGGCAT
Lagenorhynchus albirostris genome assembly, chromosome: 10.
OX459082.1:76260241-76260260
GAAAAAGAACCCTTTTGGGACACAGGAATG76260241TTTTGTGGGAAAGAAGGTGGTATGGAATAAAGTAAGAAGAAATGTGGCAT
Balaenoptera acutorostrata genome assembly, chromosome: 10.
OX465360.1:79395709-79395728
GAAAAAGAACCCTTTTGGGAAACAGGAATG79395709TTTTGTGGGAAAGAAGGTGGTATGGCATAAAGTAAGAAGAAATGTGGCAT
Globicephala melas genome assembly, chromosome: 11.
OY734050.1:99320214-99320233
GAAAAAGAACCCTTTTGGGACACAGGAATG99320214TTTTGTGGGAAAGAAGGTGGTATGGAATAAAGTAAGAAGAAATGTGGCAT
Phocoena phocoena genome assembly, chromosome: 10.
OZ004767.1:77249244-77249263
GAAAAAGAACCCTTTTGGGACACAGGAATG77249244TTTTGTGGGAAAGAAGGTGGTATGGAATAAAGTAAGAAGAAATGTGGCAT
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 1.
OU383773.1:110084764-110084783
GCCATGTCCTGACCTTCAGGTGCCCCTTCA110084764TTTTGTGGGAAAGAAGGTGGTTTCAAGTCTCAGTTTTAATGGAAAACAAC
Fringilla coelebs genome assembly, chromosome: 1.
OY740724.1:110048128-110048147
GCCATGTCCTGACCTTCAGGTGCCCCTGCC110048128TTTTGTGGGAAAGAAGGTGGTTTCAAGTCCCAGTTTTAATGGAAAACAAC
JP 2009538603-A/31: Modified Microbial Nucleic Acid.
FV536052.1:3666721-3666740
GGATATGTGTGTGATGATGGTTGGATTGAT3666721TTTTGTGGGAAAGAAGGTGGTGGTTTAGGTATAGGTTTTGAATTTTTTGT
JP 2009538603-A/32: Modified Microbial Nucleic Acid.
FV536053.1:3666721-3666740
GGATATGTGTGTGATGATGGTTGGATTGAT3666721TTTTGTGGGAAAGAAGGTGGTGGTTTAGGTATAGGTTTTGAATTTTTTGT
Meconema thalassinum genome assembly, chromosome: X.
OX336389.2:24271303-24271322
GTGAGGTTATACTACCTCTGCACTCCGTCC24271303TTTTGTGGGAAAGAAGGTGGCATCCGTGGATGATATTTTCGGTGTCCACT
Cydia fagiglandana genome assembly, chromosome: Z.
OY750790.1:35419822-35419841
GTTTTTCAGGTTTAATTTCTAAAATATCGA35419822TTTTGTGGGAAAGAAGGTGGGAACCAAAATTGTTCAGAATTTGATTCTCT
Ophion ventricosus genome assembly, chromosome: 9.
OZ010719.1:4377954-4377973
AAACTCTGAAAATCCCGGCCCCTCGTCACT4377954TTTTGTGGGAAAGAAGGTGGAGAAAAAAAAAGCAAAATTTCAGACTCCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCACCTTCTTTCCCACAAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCACCTTCTTTCCCACAAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.308 | 0.299 | search_plus_done; http://172.18.8.135:50400/match?q=CCACCTTCTTTCCCACAAAA&k=0&no_gap=0&offset=0&limit=50
0.380 | 0.072 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTGTGGGAAAGAAGGTGG&k=0&no_gap=0&offset=0&limit=38
0.389 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).