GGGenome | Results

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2025-04-14 05:46:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Digitaria exilis genome assembly, chromosome: 3B.
LR994609.1:36896628-36896647

TGTAAGTCTAGTCTCAACATTCTTTCTTAT36896628CCAGAAAATTTGCGTCCAGTAATCTTCTCGGACTCGTACAGAATATGATT

EST683029 normalized cDNA library of onion Allium cepa cDNA clone ACAIC49, mRNA sequence.
CF446684.1:267-286

AATCATATTATTTATGAAGCAGAGAAGATG267ACTGGACGCAAATTTTCTGGCTAGAGTTGCAATAGTATTGGCATGCATCC

TSA: Allium cepa CUDHLF2_6420 mRNA sequence.
JR849238.1:435-454

AATCATATTATTTATGAAGCAGAGAAGATG435ACTGGACGCAAATTTTCTGGCTAGAGTTGCAATAGTATTGGCATGCATCC

Triticum aestivum genome assembly, chromosome: 7A.
LR877327.1:10452414-10452433

CACGTTTTGATGATGTTTAACAATTCGGGC10452414ACTGGACGCAAATTTTCTGGAAATTACAGCAAGATCAAATAACTATCATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.157 | 0.148 | search_plus_done; http://172.18.8.135:50400/match?q=CCAGAAAATTTGCGTCCAGT&k=0&no_gap=0&offset=0&limit=50
0.233 | 0.076 | search_minus_done; http://172.18.8.135:50400/match?q=ACTGGACGCAAATTTTCTGG&k=0&no_gap=0&offset=0&limit=49
0.235 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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