GGGenome | Results

2025-03-27 08:42:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Apis cerana ACCB08193 mRNA sequence.
JR046972.1:771-790

TTAAATCAATCGCGAAGAGAATCGAAATCA771CCAGAAGAATCACCAGCCATCATTATTGCCTCTAGACCTCACTCATCCAC

Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
AP015042.1:27381003-27381022

TTAGGTTCTCCCAACCTTAGATCAACGTCT27381003CCAGAAGAATCACCAGCCATGTCTGAAGAATAAGAAGAAGAAGAAGAAGG

Sylvilagus floridanus genome assembly, chromosome: 6.
OX463228.1:15454961-15454980

ATCTGCTGATTCACTCCCCAGATGACCACA15454961ATGGCTGGTGATTCTTCTGGGTCTCTCACATGGGTGCAGGGGCCCAATCA

Vigna angularis mRNA, clone: VES10H08.
HX946031.1:80-99

CTTCCTTCTTCTTCTTCTTATTCTTCAGAC80ATGGCTGGTGATTCTTCTGGAGACGTTGATCTAAGGTTGGGAGAACCTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.237 | 0.228 | search_plus_done; http://172.18.8.135:50400/match?q=CCAGAAGAATCACCAGCCAT&k=0&no_gap=0&offset=0&limit=50
0.346 | 0.110 | search_minus_done; http://172.18.8.135:50400/match?q=ATGGCTGGTGATTCTTCTGG&k=0&no_gap=0&offset=0&limit=48
0.347 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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