GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 23:36:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium subterraneum genome assembly, chromosome: 3.
OX637463.1:54390879-54390898
TTAACAGCAACATAATGTGAAATATTTCCA54390879CCAGCACTATCACCAGAAAGAAAAACATTTGATAAATCAGCATGTAGTAA
Alisma plantago-aquatica genome assembly, chromosome: 4.
OY856412.1:534708668-534708687
AATGCCAGACATGATAATGTCTTCAATGCT534708668CCAGCACTATCACCAGAAAGGAAACTTTACCCCTTAAAGGTGATAGCAAG
Brachypalpus laphriformis genome assembly, chromosome: 4.
OX246756.1:143704242-143704261
TGTTATATGGATGCAACACGTGGAGAGTGA143704242CCAGCACTATCACCAGAAAGCTGCAAACGTGCACTAGTAGGTGTCTACGC
Mobula hypostoma genome assembly, chromosome: X2.
OY992617.1:34589662-34589681
AAGACTCAGATTCAATCCTAATCTCTAGTG34589662CTTTCTGGTGATAGTGCTGGTACAGTTGTATGTTCTTTCTGTGACAGGAG
Trifolium repens isolate ACLI19 chromosome 01_Occ.
CP125836.1:5304271-5304290
CTAGAACATGCTGATTTATCAAATGTTTTT5304271CTTTCTGGTGATAGTGCTGGTGGAAATATTTCACATTATGTTGCTGTTAA
Trifolium repens isolate ACLI19 chromosome 01_Pall.
CP125837.1:5609230-5609249
CTACGACATGCTGATTTATCAAATGTTTTT5609230CTTTCTGGTGATAGTGCTGGTGGAAATATTTCACATTATGTTGCTGTTAA
Trifolium dubium genome assembly, chromosome: 9.
OX638070.1:3422257-3422276
CTTAAATATGCTGATTTATCAAATGTTTTT3422257CTTTCTGGTGATAGTGCTGGTGGTAACATTTCACATTATGTTGCTGTTAA
Trifolium fragiferum genome assembly, chromosome: 8.
OX940796.1:7403003-7403022
CTACGACATGCTGATTTATCAAATGTGTTT7403003CTTTCTGGTGATAGTGCTGGTGGAAATATTTCACATTATGTTGCTGTTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCAGCACTATCACCAGAAAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAGCACTATCACCAGAAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.101 | 0.092 | search_plus_done; http://172.18.8.135:50400/match?q=CCAGCACTATCACCAGAAAG&k=0&no_gap=0&offset=0&limit=50
0.128 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTCTGGTGATAGTGCTGG&k=0&no_gap=0&offset=0&limit=47
0.132 | 0.004 | cgi_end;

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