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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 23:03:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 86 from Patent WO2006075084.
CS359747.1:140-164
CATTGTCCAGCTTGGCAGAATAAGTCTTCT140CCAGCTCCATTTAGTGAGGGTTAATCATTATGCTGAGTGATATCTTTTTTTTTCA
Sequence 90 from Patent WO2006075084.
CS359751.1:1519-1543
CGAGGCCTCCGAAGCACCCCAAAGCCAGCC1519CCAGCTCCATTTAGTGAGGGTTAATAATCGAATTCCCGCGGCCGTCGACCCGGGC
Sequence 91 from Patent WO2006075084.
CS359752.1:1287-1311
CATTGTCCAGCTTGGCAGAATAAGTCTTCT1287CCAGCTCCATTTAGTGAGGGTTAATCATTATGCTGAGTGATATCTTTTTTTTTCA
Sequence 91 from Patent WO2006075084.
CS359752.1:1462-1486
CCACTTTGGCCTGGCTTCCCAGCCATCTTC1462CCAGCTCCATTTAGTGAGGGTTAATAATCGAATTCCCGCGTCGACCCGGGCGGCC
Sequence 99 from Patent WO2006075084.
CS359760.1:1499-1523
GACCTCACTGAGTTGAAAAAGCTGGACTTC1499CCAGCTCCATTTAGTGAGGGTTAATAATCGAATTCCCGCGGCCGTCGACCCGGGC
Sequence 103 from Patent WO2006075084.
CS359764.1:1553-1577
TGTAGTCCTGCACATCCTCCTTCAGCAGCT1553CCAGCTCCATTTAGTGAGGGTTAATAATCACTAGTGAATTCGCGGCCGCGTCGAC
Sequence 104 from Patent WO2006075084.
CS359765.1:1321-1345
AGTTGGTTGCTTCTCTCTGAGCCTTACTTG1321CCAGCTCCATTTAGTGAGGGTTAATAATCACTAGTGAATTCGCGGCCGCGTCGAC
Sequence 105 from Patent WO2006075084.
CS359766.1:1351-1375
CCTCAGGGTCATCTTCCAGGTTTGAGTGCA1351CCAGCTCCATTTAGTGAGGGTTAATAATCGAATTCCCGCGGCGTCGACCCGGGCG
36 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi812 similar to ebiP768 [Anopheles gambiae]; alpha-catenin [D melanogaster]; cadherin-associated pr
CB275486.1:491-515
TTATCTTCAGCGCATAGCACTTTATTGTCA491CCAGCTCCATTTAGTGAGGGTTAAT
37 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi813, mRNA sequence.
CB275487.1:470-494
CCTCCAAATTGTTCCAACCTCGCCTGTTAC470CCAGCTCCATTTAGTGAGGGTTAAT
40 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi816, mRNA sequence.
CB275490.1:357-381
GCTTTAGGTGTAAATAACATTAAATATTTC357CCAGCTCCATTTAGTGAGGGTTAAT
EST0222 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991380.1:454-478
ATAGCACTAAATAGGGAGCCGCCGAATACA454CCAGCTCCATTTAGTGAGGGTTAATAATCGAATTCCCG
EST0223 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991381.1:459-483
AAACATCCCTTGCAAATGGCTAGTGACTTA459CCAGCTCCATTTAGTGAGGGTTAAT
EST0243 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991384.1:243-267
TACAATGCACAAGGCAGAGTCGTTAGAGGT243CCAGCTCCATTTAGTGAGGGTTAATAA
EST0801 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991431.1:438-462
ATCGACTTCGTGCTGTAGTTGCAGTGAGCT438CCAGCTCCATTTAGTGAGGGTTAATAATCGAATTCCCGCGGCC
54-36 Normalized cDNA from Longissimus Dorsi muscle and backfat tissues of pigs Sus scrofa cDNA 3', mRNA sequence.
CN605641.1:289-313
AGATCATGGTTGTTTAATGGAACATTTTTG289CCAGCTCCATTTAGTGAGGGTTAAT
54-38 Normalized cDNA from Longissimus Dorsi muscle and backfat tissues of pigs Sus scrofa cDNA 3', mRNA sequence.
CN605643.1:325-349
ATTACCCCAACAACCACTCTTTCTACTCTA325CCAGCTCCATTTAGTGAGGGTTAAT
DD-L16-1Q Sugar Beet differential display cDNA Beta vulgaris cDNA similar to (UDP-glucose 4-epimerase), mRNA sequence.
CX779643.1:573-597
CGTCGAGCAATGTGGGACCCAATGAAACCA573CCAGCTCCATTTAGTGAGGGTTAATA
DD-L16-1K Sugar Beet differential display cDNA Beta vulgaris cDNA similar to (UDP-glucose 4-epimerase), mRNA sequence.
CX779644.1:573-597
CGTCGAGCAATGTGGGACCCAATGAAACCA573CCAGCTCCATTTAGTGAGGGTTAATA
DD-L16-3Q Sugar Beet differential display cDNA Beta vulgaris cDNA similar to (sugar epimerase), mRNA sequence.
CX779645.1:573-597
GGCACTTGGAAAGGTGGTAGGGAGAAGGCT573CCAGCTCCATTTAGTGAGGGTTAATA
DD-L16-3K Sugar Beet differential display cDNA Beta vulgaris cDNA similar to (sugar epimerase), mRNA sequence.
CX779646.1:573-597
GGCACTTGGAAAGGTGGTAGGGAGAAGGCT573CCAGCTCCATTTAGTGAGGGTTAATA
DD-L7-5 Sugar Beet differential display cDNA Beta vulgaris cDNA, mRNA sequence.
CX779655.1:571-595
AAAATGAGGGCAAGCTTACAATTGAGGTGG571CCAGCTCCATTTAGTGAGGGTTAAT
DD-L26-1a Sugar Beet differential display cDNA Beta vulgaris cDNA similar to Folate-binding protein, mRNA sequence.
CX779671.1:496-520
GCAAGTCTGGTGCCAGCAGCCGCGGTAATT496CCAGCTCCATTTAGTGAGGGTTAAT
DD-L27-1a Sugar Beet differential display cDNA Beta vulgaris cDNA, mRNA sequence.
CX779672.1:272-296
AAGTCTTTAGCCCATAGCATACTTCTGAGT272CCAGCTCCATTTAGTGAGGGTTAAT
DD-L31-4 Sugar Beet differential display cDNA Beta vulgaris cDNA, mRNA sequence.
CX779683.1:471-495
TCTGTTAGATACTGCTTCAGTACATTTTTC471CCAGCTCCATTTAGTGAGGGTTAAT
DD-P28-1.3 Sugar Beet differential display cDNA Beta vulgaris cDNA similar to Probable folate binding protein, mRNA sequence.
CX779697.1:498-522
GCAAGTCTGGTGCCAGCAGCCGCGGTAATT498CCAGCTCCATTTAGTGAGGGTTAATA
DD-P88-3.1 Sugar Beet differential display cDNA Beta vulgaris cDNA, mRNA sequence.
CX779704.1:293-317
GGCCCCCAAGGGCACGTGTCGTAGGCTAAG293CCAGCTCCATTTAGTGAGGGTTAATA
DD-P88-2.3 Sugar Beet differential display cDNA Beta vulgaris cDNA similar to Rubisco activase, mRNA sequence.
CX779705.1:599-623
AGTTGATCATCGGAGATGTCTTCAGCCAAA599CCAGCTCCATTTAGTGAGGGTTAATA
DD-P88-1.4 Sugar Beet differential display cDNA Beta vulgaris cDNA, mRNA sequence.
CX779706.1:714-738
CTATCTACCTCTAGCACAATATCTCGCAAT714CCAGCTCCATTTAGTGAGGGTTAATA
c8l Oreochromis niloticus adult liver Oreochromis niloticus cDNA clone c8l, mRNA sequence.
GE616624.1:192-216
CTGATTTCTTCTAGTGTCTCTGCAGTTTCA192CCAGCTCCATTTAGTGAGGGTTAAT
cd11 Oreochromis niloticus adult liver Oreochromis niloticus cDNA clone cd11, mRNA sequence.
GE616626.1:256-280
CAAACATCTCAGGCCTCTTGAACATGACGT256CCAGCTCCATTTAGTGAGGGTTAAT
cd5 Oreochromis niloticus adult liver Oreochromis niloticus cDNA clone cd5, mRNA sequence.
GE616629.1:373-397
CTCTTTGTACTGTGCAAGTGAAGCATTTCT373CCAGCTCCATTTAGTGAGGGTTAAT
cd17b2 Oreochromis niloticus adult liver Oreochromis niloticus cDNA clone cd17b2, mRNA sequence.
GE616630.1:393-417
AGTTCTGAGAGTCTCTGATGATCTGTGCCT393CCAGCTCCATTTAGTGAGGGTTAAT
cd14 Oreochromis niloticus adult liver Oreochromis niloticus cDNA clone cd14, mRNA sequence.
GE616632.1:411-435
TAATGTATTTCTGATGGGTCTCTGACTGGA411CCAGCTCCATTTAGTGAGGGTTAAT
cd17l Oreochromis niloticus adult liver Oreochromis niloticus cDNA clone cd17l, mRNA sequence.
GE616633.1:413-437
TCCACTGTGTTGATATGTTCACCTTGAACT413CCAGCTCCATTTAGTGAGGGTTAAT
cd10 Oreochromis niloticus adult liver Oreochromis niloticus cDNA clone cd10, mRNA sequence.
GE616634.1:393-417
AGTTCTGAGAGTCTCTGATGATCTGTGCCT393CCAGCTCCATTTAGTGAGGGTTAAT
U94862 Rat vascular smooth muscle cells treated with homocysteine Rattus norvegicus cDNA clone HCY5, mRNA sequence.
U94862.1:201-225
AGCACCTAGCTGTGCCTGTTCAGCGTGTGT201CCAGCTCCATTTAGTGAGGGTTAATAATCACTAGTGAATTC
Sequence 8 from patent US 6593084.
AR353569.1:1-25
1ATTAACCCTCACTAAATGGAGCTGG
Sequence 4 from Patent WO0141804.
AX174706.1:1-25
1ATTAACCCTCACTAAATGGAGCTGG
Sequence 34 from Patent WO0240666.
AX431401.1:1-25
1ATTAACCCTCACTAAATGGAGCTGG
JP 2002515754-A/19: Method for identifying translationally regulated genes.
BD195203.1:1-25
1ATTAACCCTCACTAAATGGAGCTGG
Sequence 90 from Patent WO2006075084.
CS359751.1:1132-1156
ACGCGTGCGGCCGCGAATTCACTAGTGATT1132ATTAACCCTCACTAAATGGAGCTGGCATCTCCATCTTGGCTTGTTTCAGTGCTGC
Sequence 91 from Patent WO2006075084.
CS359752.1:1132-1156
ACGCGTGCGGCCGCGAATTCACTAGTGATT1132ATTAACCCTCACTAAATGGAGCTGGCTGAGCTGGGCAGAGAGGCTGTCGATGCGG
Sequence 99 from Patent WO2006075084.
CS359760.1:1130-1154
TCACGCGTGGCCGCGAATTCACTAGTGATT1130ATTAACCCTCACTAAATGGAGCTGGCATCAAATACAAATGCCACACAATGAATTC
Sequence 103 from Patent WO2006075084.
CS359764.1:1126-1150
GAATTCACGCGTGGCCGCGGGAATTCGATT1126ATTAACCCTCACTAAATGGAGCTGGTGGAGATGTGAACATCTTCTTTGTCCACCA
Sequence 104 from Patent WO2006075084.
CS359765.1:1126-1150
GAATTCACGCGTGGCCGCGGGAATTCGATT1126ATTAACCCTCACTAAATGGAGCTGGTTATTGCAATTCATTGTTCTCAAAATACTT
Sequence 105 from Patent WO2006075084.
CS359766.1:1132-1156
ACGCGTGCGGCCGCGAATTCACTAGTGATT1132ATTAACCCTCACTAAATGGAGCTGGATGTGATTTCAGATCTGCACCGAGAAACAT
JP 2004512852-A/25: Fat Regulated Genes, Uses Thereof, and Compounds for Modulating Same.
DD010087.1:1-25
1ATTAACCCTCACTAAATGGAGCTGG
JP 2003235570-A/8: Polypeptide having interaction with hibernation-specific protein and its utilization.
DJ389556.1:1-25
1ATTAACCCTCACTAAATGGAGCTGG
Sequence 16 from patent US 8349562.
GZ703053.1:1-25
1ATTAACCCTCACTAAATGGAGCTGG
37 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi813, mRNA sequence.
CB275487.1:1-25
1ATTAACCCTCACTAAATGGAGCTGGCTTTAATTTCTTCTCAGAAAATGGGATTTT
39 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi815, mRNA sequence.
CB275489.1:1-25
1ATTAACCCTCACTAAATGGAGCTGGGACTACAGGCATGCATCACCACACTTGGCT
40 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi816, mRNA sequence.
CB275490.1:1-25
1ATTAACCCTCACTAAATGGAGCTGGAGCTAGAGCTACCAACAGCTGGAAAAAGCA
41 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi817, mRNA sequence.
CB275491.1:1-25
1ATTAACCCTCACTAAATGGAGCTGGTACTTATCTGTGCATGGACTCTTTTAGAGC
42 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi818, mRNA sequence.
CB275492.1:1-25
1ATTAACCCTCACTAAATGGAGCTGGCATACTAGTTTATTTTTTTAGATGGCAAGC
44 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi8110, mRNA sequence.
CB275494.1:1-25
1ATTAACCCTCACTAAATGGAGCTGGCAGTTTTCACGAGAACAGAGATGATAAAAA
EST0173 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991374.1:18-42
CGAATTCACTAGTGATT18ATTAACCCTCACTAAATGGAGCTGGTAGTTCGAAAGAGAAAGTTTTGAAGAAGAA
EST0191 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991376.1:15-39
ATTCACTAGTGATT15ATTAACCCTCACTAAATGGAGCTGGCTGGGCCTGGCTTGCTTACGCGGACAACAA
EST0223 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991381.1:19-43
GCGAATTCACTAGTGATT19ATTAACCCTCACTAAATGGAGCTGGGATCCATCAGGTGGCGAAGAAACTTAGGAG
EST0241 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991383.1:14-38
TTCACTAGTGATT14ATTAACCCTCACTAAATGGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCA
EST0243 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991384.1:19-43
GCGAATTCACTAGTGATT19ATTAACCCTCACTAAATGGAGCTGGTGATCGAACCTTGACTCAAGGATTGAAGGG
EST0824 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991433.1:3-27
TT3ATTAACCCTCACTAAATGGAGCTGGTTTACTTATGNGGGCTACCTCGTTACAATA
54-18 Normalized cDNA from Longissimus Dorsi muscle and backfat tissues of pigs Sus scrofa cDNA 3', mRNA sequence.
CN605623.1:1-25
1ATTAACCCTCACTAAATGGAGCTGGGGAACTGAAAGGATTCTGCCTTCTCTGACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCAGCTCCATTTAGTGAGGGTTAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAGCTCCATTTAGTGAGGGTTAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.544 | 1.535 | search_plus_done; http://172.18.8.135:50400/match?q=CCAGCTCCATTTAGTGAGGGTTAAT&k=0&no_gap=0&offset=0&limit=50
1.976 | 0.432 | search_minus_done; http://172.18.8.135:50400/match?q=ATTAACCCTCACTAAATGGAGCTGG&k=0&no_gap=0&offset=0&limit=13
1.994 | 0.018 | cgi_end;

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