GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 03:21:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis clone KBrB017P03, complete sequence.
CU915246.1:65785-65807
CAAAGAGGCAAATAGAAAATGTGAATCATG65785CCATCATCATTCATTAGACAAGTTTTTAATCTGTACAATGATAATTGTGATAT
MLN2_888 Brassica rapa mature lateral nectary, normalized (MLN2) Brassica rapa cDNA similar to protein phosphatase 2C, putative / PP2C, putative, mRNA sequence.
GR720866.1:122-144
ATATCACAATTATCATTGTACAGATTAAAA122ACTTGTCTAATGAATGATGATGGCATGATTCACATTTTCTATTTGCCTCTTTG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_17229.
FX701116.1:1508-1530
ATATCACAATTATCATTGTACAGATTAAAA1508ACTTGTCTAATGAATGATGATGGCATGATTCACATTTTCTATTTGCCTCTTTG
KBrB002N16F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB002N16, genomic survey sequence.
DX012071.1:452-474
ATATCACAATTATCATTGTACAGATTAAAA452ACTTGTCTAATGAATGATGATGGCATGATTCACATTTTCTATTTGCCTCTTTG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013F17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC232553.1:81428-81450
ATATCACAATTATCATTGTACAGATTAAAA81428ACTTGTCTAATGAATGATGATGGCATGATTCACATTTTCTATTTGCCTCTTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCATCATCATTCATTAGACAAGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCATCATCATTCATTAGACAAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.094 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=CCATCATCATTCATTAGACAAGT&k=0&no_gap=0&offset=0&limit=50
0.220 | 0.126 | search_minus_done; http://172.18.8.135:50400/match?q=ACTTGTCTAATGAATGATGATGG&k=0&no_gap=0&offset=0&limit=49
0.222 | 0.003 | cgi_end;

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