GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 23:49:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium pratense cDNA clone:RCE22421.
BB916920.1:34-55
AGACTAAATAAAAGAAAAATAAACCATAAA34CCATTTCATACATACACCACCAAGTATATATATATAGAGTCTTTATAGAAAA
Trifolium repens mRNA, clone: WCC36f14, unspecified EST.
FY466771.1:22-43
AAAAGCAAAATAAACCATTAA22CCATTTCATACATACACCACCAAGTATATATATATATATATATATATATAGT
Trifolium subterraneum genome assembly, chromosome: 3.
OX637463.1:53211708-53211729
TGACTAAATAAAAGAAAAATAAACCATAAA53211708CCATTTCATACATACACCACCAAGTATATATATAGTCTTTCATAGAAAATAG
Trifolium dubium genome assembly, chromosome: 7.
OX638068.1:41518837-41518858
AAGAAGAGGCTAAACAAAATGAAAAATTAA41518837CCATTTCATACATACACCACCAATTATATATATATATATATATATATATATA
TP_ABa0020N16.r TP_ABa Trifolium pratense genomic clone TP_ABa0020N16 3', genomic survey sequence.
HR249055.1:234-255
TATTTTCTATAAAGACTCTATATATATACT234TGGTGGTGTATGTATGAAATGGTTTATGGTTTATTTTTCTTTTATTTAGTCT
Trifolium repens isolate ACLI19 chromosome 01_Occ.
CP125836.1:6433099-6433120
TTTCTATAAAAGACTATATATATATATACT6433099TGGTGGTGTATGTATGAAATGGTTTATGGTTTATTTTTCTTTTATTTTGTCT
Trifolium repens isolate ACLI19 chromosome 01_Pall.
CP125837.1:6686139-6686160
ATTTTCTATAAAAGACTATATATATATACT6686139TGGTGGTGTATGTATGAAATGGTTTATGGTTTATTTTGCTTTTATTTTGTCT
Trifolium dubium genome assembly, chromosome: 9.
OX638070.1:4144849-4144870
ATTTTCCATGAAAGACTCTATATATATAAT4144849TGGTGGTGTATGTATGAAATGGTTAATTTTTCTTTTTGTTTAGCCTCTTCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCATTTCATACATACACCACCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCATTTCATACATACACCACCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.194 | 0.185 | search_plus_done; http://172.18.8.135:50400/match?q=CCATTTCATACATACACCACCA&k=0&no_gap=0&offset=0&limit=50
0.246 | 0.053 | search_minus_done; http://172.18.8.135:50400/match?q=TGGTGGTGTATGTATGAAATGG&k=0&no_gap=0&offset=0&limit=46
0.249 | 0.003 | cgi_end;

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