GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 09:15:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mus spretus genome assembly, chromosome: 9.
OW971688.1:26570606-26570623
ATCCACATTGTGTAATCCTACAAGAAGATA26570606CCCACAAGAAACAACTGAACTGGTAGAAGATTTATTTTCCATGTGTTT
Rangifer tarandus platyrhyncus genome assembly, chromosome: 13.
OX459949.2:71278945-71278962
TTGAAGACTGTTTGACTGTTTACTTGGAAA71278945CCCACAAGAAACAACTGAAAACCTTATTGAAATGACGAAATAATTGAG
Myotis daubentonii genome assembly, chromosome: 3.
OY725361.1:148336882-148336899
AAAACAACAACAACAAACAAACAAAAAACC148336882CCCACAAGAAACAACTGAACAAAAGAAACAAGGGCTAGGAACAGTGAT
Furcifer pardalis isolate Fpa_1 chromosome 4.
CP126893.1:122571196-122571213
CATCTGCAGCTCAGCACACAGTAAATCCCA122571196CCCACAAGAAACAACTGAAACAGGTTTGTAGGCTCTTCTACATTCTAA
Erithacus rubecula genome assembly, chromosome: 2.
LR812104.1:84692087-84692104
AGCTTTTCAAACACTCAAAATTCCTTCTGA84692087CCCACAAGAAACAACTGAGTATCATTCTGCAGTCTGTATTATACACCT
Anas platyrhynchos genome assembly, chromosome: 12.
LS423622.1:2740853-2740870
AGAACCTGAAGTATGGCTAGGATTCTTCTC2740853CCCACAAGAAACAACTGAAAACTAAACCCTTACCACCTAGAAAAAGAA
Meleagris gallopavo genome assembly, chromosome: 1.
OW982252.1:182498914-182498931
ATCTCCTGCATTTCCAACAAAAGCATTTCT182498914CCCACAAGAAACAACTGAAATGCCACCTATGGAAGAACCAACTCAAAT
Meleagris gallopavo genome assembly, chromosome: 1.
OW982291.1:182444135-182444152
ATCTCCTGCATTTCCAACAAAAGCATTTCT182444135CCCACAAGAAACAACTGAAATGCCACCTATGGAAGAACCAACTCAAAT
Geopsychrobacteraceae bacterium isolate 83e969e6-e5ac-4757-b3b4-5cc8fa5ada5b genome assembly, chromosome: 1.
OY762644.1:4958464-4958481
AGGTTCTGGTGGAACCGCTGGACCGCCATG4958464CCCACAAGAAACAACTGATCGGGCCGATCAGGGAAGCGGTGGAGTGGT
Geopsychrobacteraceae bacterium isolate 9b3a8700-fb89-40a3-bee9-e3c3af0853c2 genome assembly, chromosome: 1.
OY771538.1:4870694-4870711
AGGTTCTGGTGGAACCGCTGGACCGCCATG4870694CCCACAAGAAACAACTGATCGGGCCGATCAGGGAAGCGGTGGAGTGGT
CLJ292-D05.x1d-t SHGC-CLJ2 Gasterosteus aculeatus cDNA clone CLJ292-D05 3', mRNA sequence.
DW616417.1:642-659
TTCAGCCAGAATTGAGAGAGAAAGACAAAA642CCCACAAGAAACAACTGAGACAAACAGGCGTTTTAGTGGAATAAATAC
CLJ372-O09.x1d-t SHGC-CLJ2 Gasterosteus aculeatus cDNA clone CLJ372-O09 3', mRNA sequence.
DW641111.1:125-142
TTCAGCCAGAATTGAGAGAGAAAGACAAAA125CCCACAAGAAACAACTGAGACAAACGGGCGTTTTAGTGGAATAAATAC
Striga hermonthica cDNA, clone: SHAA-aah85g09, 5'-end sequence.
FS475243.1:626-643
TCAGTGGTGGCCTCGGACGGTGAACTGGGG626CCCACAAGAAACAACTGATAAGGAGGATTATCAGAGGACCGCGAACCA
OSJKBb0084L04.R OSJKBb Oryza sativa genomic 3', genomic survey sequence.
KS772757.1:145-162
GGTTGTGTGCTTTTGTTAGTCCCTACCCAT145CCCACAAGAAACAACTGATGGTGAATCTAAATCGAGAGGTCTCTCCAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB085J21, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.
AC232529.1:122701-122718
TTCTAAGCGAACTCTCAACATTAGCATCGA122701CCCACAAGAAACAACTGATTTCTATGTTTTTCTTTACAATATTCAAAA
Capsicum annuum Takanotsume DNA, chromosome 9, sequence.
AP026704.1:159232656-159232673
TATCCTTCACTTTATTTATAGTCAATGCCT159232656CCCACAAGAAACAACTGAAGAAGTAAAGGGGATCAGCCCAATCCATCA
Oryza sativa Japonica Group cultivar Changxianggeng 1813 chromosome 7.
CP101147.1:29305884-29305901
GGTTGTGTGCTTTTGTTAGTCCCTACCCAT29305884CCCACAAGAAACAACTGATGGTGAATCTAAATCGAGAGGTCTCTCCAT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:24726551-24726568
TTCTAAGCGAACTCTCAACATTAGCATCGA24726551CCCACAAGAAACAACTGATTTCTATGTTTTTCTTTACAATATTCAAAA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:24865605-24865622
TTCTAAGCGAACTCTCAACATTAGCGTCGA24865605CCCACAAGAAACAACTGATTTCTATGTTTTTATTTACAATATTCAAAA
Brassica napus genome assembly, chromosome: C07.
HG994371.1:48569552-48569569
TTCTAAGCGAACTCGCAACATTATCATCGA48569552CCCACAAGAAACAACTGATTTCTATATTTTTCTTTACAATATACAAAA
Brassica rapa genome, scaffold: A03.
LR031572.1:24324753-24324770
TTCTAAGCGAACTCTCAACATTAGCATCGA24324753CCCACAAGAAACAACTGATTTCTATATTTTTATTTATAACATTCAAAA
Brassica rapa genome, scaffold: A03.
LR031572.1:24357094-24357111
TTCTAAGCGAACTCTCAACATTAGCATCGA24357094CCCACAAGAAACAACTGATTTCTATGTTTTTCTTTACAATATTCAAAA
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24452627-24452644
TTCTAAGCGAACTCTCAACATTAGCATCGA24452627CCCACAAGAAACAACTGATTTCTATATTTTTATTTATAACATTCAAAA
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24484970-24484987
TTCTAAGCGAACTCTCAACATTAGCATCGA24484970CCCACAAGAAACAACTGATTTCTATGTTTTTCTTTACAATATTCAAAA
Dunaliella primolecta genome assembly, chromosome: 5.
OU611755.1:10809665-10809682
TGCTTATGCCATGCCATCCACCAGCACTGT10809665CCCACAAGAAACAACTGAAAACCTTGCATGGAGGCCTTTCCGTCTACT
Polytrichum commune genome assembly, chromosome: 1.
OX485803.1:13915449-13915466
CGTTGAATTTACATACTGTAACGACAGATT13915449CCCACAAGAAACAACTGAAAACAAAATCCTCAAATACCAACCCTTATT
Viscum album genome assembly, chromosome: 10_4.
OY728166.1:428038319-428038336
GTTGCATTCATGGGGACACAACTGTCAAGA428038319CCCACAAGAAACAACTGACCTCTGCTGCCTGAGAACACAGCCTAATCC
Celastrina argiolus genome assembly, chromosome: 8.
LR994585.1:8775526-8775543
ACTAGGTTTCCGGAATAGCAGCTCGTAACG8775526CCCACAAGAAACAACTGACAAGCTAGACCTGTGGGTCGTTGACAATTT
Melolontha melolontha genome assembly, chromosome: 8.
OW285242.1:68616806-68616823
TTTAATTAATTTCAATTTGCTGAAATTACT68616806CCCACAAGAAACAACTGATACGCAAATTGTATAAATAACTTTAGTGCG
Pherbina coryleti genome assembly, chromosome: 3.
OX030950.1:55373342-55373359
TAAAATAAACAATTCATCGCGCCATGAGAC55373342CCCACAAGAAACAACTGAATTTAACATAAATTCACCATTGACCTCATG
Piscicola geometra genome assembly, chromosome: 10.
OX030964.1:985122-985139
CTCTTTCGGCACTGGCACAATCAAGTTGAG985122CCCACAAGAAACAACTGAAGCATTTAATCCAGACTTCTCCTCGTTGAG
Piscicola geometra genome assembly, chromosome: 10.
OX030964.1:1100253-1100270
CTCTTTCGGCACTGGCACAATCAAGTTGAG1100253CCCACAAGAAACAACTGAAGCATTTAATCCAGATTTCTCCTCGTTGAT
Schistosoma intercalatum genome assembly, chromosome: Z.
OX103732.1:69184352-69184369
TAATATTCGTGTTTCGTATTGAACAAGTTT69184352CCCACAAGAAACAACTGAATTTTGAGGACAAATAATATTTGACATGAC
Schistosoma intercalatum genome assembly, chromosome: Z.
OX103883.1:64826979-64826996
TAATATTCGTGTTTCGTATTGAACAAGTTT64826979CCCACAAGAAACAACTGAATTTTGAGGACAAATAATATTTGACATGAC
Apocheima hispidaria genome assembly, chromosome: 24.
OX388168.1:2984031-2984048
ATAAAAGTTAAAAAATTGCGGGAAATATTG2984031CCCACAAGAAACAACTGAAAATATATTTTTTTTGTGTAAATACTAATA
Mimachlamys varia genome assembly, chromosome: 1.
OX392527.1:25539442-25539459
GGTTTACTTAGAACCCCCCAAACCCCTTTC25539442CCCACAAGAAACAACTGACAATTTTCACAATAATTTCGCAGGATTTTT
Dysmachus trigonus genome assembly, chromosome: 3.
OX454321.1:42831171-42831188
GAGAAAGCTACCCCCCCCCCCCCCCCCCCC42831171CCCACAAGAAACAACTGATGATAGAATTCCTAACCGACACAATAAAAC
Odontocerum albicorne genome assembly, chromosome: 17.
OX463855.1:24371798-24371815
TTTTTTTATTATTTTATTTTAATTTTCCCA24371798CCCACAAGAAACAACTGATTCTTTATCGAGAGAGTCGACAAGACTCGC
Dryomyza anilis genome assembly, chromosome: 4.
OX638133.1:3120798-3120815
CACAACCCACAAGAAGTACTTCGTCTGCAA3120798CCCACAAGAAACAACTGAGACGTCTAATTGATCTTGTGGTTGATTTTT
Thysanoteuthis rhombus genome assembly, chromosome: 46.
OY735243.1:16641815-16641832
TAAATTGCCCCCTGGGGGGAATCCTTCACC16641815CCCACAAGAAACAACTGATTTAGTGATAAAGTCGTGTATAGTAAGGGA
Phengaris arion genome assembly, chromosome: 10.
OY751441.1:8983714-8983731
GTAATAGTCGGTGAGGCACTGTTCGTAACG8983714CCCACAAGAAACAACTGACAAGCTTTAGACCTGTGGAGCGTTGACAAT
Ennomos erosarius genome assembly, chromosome: 3.
OY756980.1:10198641-10198658
TATTCTATGATGAAACCTTAAAAACAACGA10198641CCCACAAGAAACAACTGAATATAGAACTTACAAATTGCAAAGACAATC
Cordilura impudica genome assembly, chromosome: 1.
OY821517.1:205895581-205895598
AAATCTGTTTAATATTTTCCTGCATGATTT205895581CCCACAAGAAACAACTGACTCAAAGGCTTTTTTATATGCAGATGACTG
Cordilura impudica genome assembly, chromosome: 4.
OY821520.1:248319598-248319615
AACTCTGTTTAATATTTTCCTGCATGGTTT248319598CCCACAAGAAACAACTGACTCAAAGGCTATTTTATATGCAGATGACTG
Xestia rhomboidea genome assembly, chromosome: 5.
OY970761.1:3475144-3475161
CTCCTGAATGCCAATTTAATTACCGAAGCG3475144CCCACAAGAAACAACTGAGAAGAATGATGAATGAGAACAGTAAAAAGT
Sepia lycidas genome assembly, chromosome: 25.
OZ010595.1:40049920-40049937
ATCTCTACCAAATATATGAAAATATAGATT40049920CCCACAAGAAACAACTGATAAAATTGTGCTGTTTTATAAAATTGAAGA
Arvicola amphibius genome assembly, chromosome: 9.
LR862389.2:5262880-5262897
TGACAGATATAACCCAGAACAATTTCAGTC5262880TCAGTTGTTTCTTGTGGGGTTGGAATCTTCAGATAGAGAGGTCTCTTC
Chionomys nivalis genome assembly, chromosome: 17.
OX465465.1:5285273-5285290
TGGCAGGTATAACCAAATCCAATCTCAGTC5285273TCAGTTGTTTCTTGTGGGGTTGGAATCTTCAGATAGAGAGGTCTCTTC
Sylvilagus floridanus genome assembly, chromosome: 22.
OX463244.1:27242133-27242150
TCACAGATTCGGCACTATTTTCATTTTTGA27242133TCAGTTGTTTCTTGTGGGCTGCCTTTGTAGCAGAATCTACGGTTTCTA
Rangifer tarandus platyrhyncus genome assembly, chromosome: 12.
OX596096.1:6673163-6673180
CTCAATTATTTCGTCATTTCAATAAGGTTT6673163TCAGTTGTTTCTTGTGGGTTTCCAAGTAAACAGTCAAACAGTCTTCAA
Muntiacus reevesi genome assembly, chromosome: 3.
OZ005626.1:200989231-200989248
CTCAATTATTTTGTGATTTCAATAAGGTTT200989231TCAGTTGTTTCTTGTGGGTTTCCAAGTAAACAGTCAAACAGTCTTCAA
Furcifer pardalis isolate Fpa_1 chromosome 7.
CP126896.1:27653340-27653357
CCTAGAACCCAGTAATGAGTCCTCTTTGCC27653340TCAGTTGTTTCTTGTGGGATTACTGTCTCTTAAGCTCCTAGTGGTCCC
Erpetoichthys calabaricus genome assembly, chromosome: 1.
LR536432.2:54265229-54265246
AACGAATAATGCAAAACACAGAAGTTGTTT54265229TCAGTTGTTTCTTGTGGGCTAGGATTTAAGCTTAAATCTCTAGGAAAG
Streptopelia turtur genome assembly, chromosome: 1.
LR594551.2:107630759-107630776
ATATTAGATCCTAAAGAAGAGCCATCTTAG107630759TCAGTTGTTTCTTGTGGGGAAGTATCATCACTTCTGGTCTGGGAAGCT
Pseudochaenichthys georgianus genome assembly, chromosome: 23.
LR792568.1:25167944-25167961
AGATTTGTTTATCTTTAGATTCATCCCGTG25167944TCAGTTGTTTCTTGTGGGGGGGAAGCCAACTGAAGGTGCCTTTCTTTT
Geopsychrobacteraceae bacterium isolate 83e969e6-e5ac-4757-b3b4-5cc8fa5ada5b genome assembly, chromosome: 2.
OY762645.1:33905-33922
ACCACTCCACCGCTTCCCTGATCGGCCCGA33905TCAGTTGTTTCTTGTGGGCATGGCGGTCCAGCGGTTCCACCAGAACCT
Geopsychrobacteraceae bacterium isolate 9b9ec7dd-163a-4fa2-980c-b25c90b2862a genome assembly, chromosome: 1.
OY776219.1:230627-230644
ACCACTCCACCGCTTCCCTGATCGGCCCGA230627TCAGTTGTTTCTTGTGGGCATGGCGGTCCAGCGGTTCCACCAGAACCT
Geopsychrobacteraceae bacterium isolate f8de7df7-17c8-42b0-849c-d6069997f774 genome assembly, chromosome: 1.
OY782666.1:181406-181423
ACCACTCCACCGCTTCCCTGATCGGCCCGA181406TCAGTTGTTTCTTGTGGGCATGGCGGTCCAGCGGTTCCACCAGAACCT
Geopsychrobacteraceae bacterium isolate 698afd50-45b2-4781-bb07-7a3ab48e4337 genome assembly, chromosome: 1.
OY782861.1:182287-182304
ACCACTCCACCGCTTCCCTGATCGGCCCGA182287TCAGTTGTTTCTTGTGGGCATGGCGGTCCAGCGGTTCCACCAGAACCT
KBrB085J21R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB085J21, genomic survey sequence.
DX074826.1:416-433
TTTTGAATATTGGAAAGAAAAACATAAAAA416TCAGTTGTTTCTTGTGGGTCGATGCTAATGTTGAGAGTTCGCTTAAAA
Rattus norvegicus clone CH230-102A6, WORKING DRAFT SEQUENCE, 4 unordered pieces.
AC127437.3:8309-8326
TCTCAGCAGTAGCCAGGATGAACCCTCCCT8309TCAGTTGTTTCTTGTGGGGTGGCTCTTCACTACAAGACAGGACACTAA
Rattus norvegicus clone CH230-474M1, WORKING DRAFT SEQUENCE.
AC128210.2:64712-64729
TCTCAGCAGTAGCCAGGATGAACCCTCCCT64712TCAGTTGTTTCTTGTGGGGTGGCTCTTCACTACAAGACAGGACACTAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH039L17, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC241126.1:38125-38142
TTTTGAATATTGTAAAGAAAAACATAGAAA38125TCAGTTGTTTCTTGTGGGTCGATGCTAATGTTGAGAGTTCGCTTAGAA
Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0458A05.
AP002870.1:28016-28033
ATGGAGAGACCTCTCGATTTAGATTCACCA28016TCAGTTGTTTCTTGTGGGATGGGTAGGGACTAACAAAAGCACACAACC
Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
AP014957.1:14249447-14249464
ATGGAGAGACCTCTCGATTTAGATTCACCA14249447TCAGTTGTTTCTTGTGGGATGGGTAGGGACTAACAAAAGCACACAACC
Oryza sativa indica subgroup Inn Ma Yebaw DNA, chromosome: 1.
AP027385.1:14294276-14294293
ATGGAGAGACCTCTCGATTTAGATTCACCA14294276TCAGTTGTTTCTTGTGGGATGGGTAGGGACTAACAAAAGCACACAACC
Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
CP012609.1:14782585-14782602
ATGGAGAGACCTCTCGATTTAGATTCACCA14782585TCAGTTGTTTCTTGTGGGATGGGTAGGGACTAACAAAAGCACACAACC
Oryza sativa genome assembly, chromosome: 1.
OX637246.1:14403750-14403767
ATGGAGAGACCTCTCGATTTAGATTCACCA14403750TCAGTTGTTTCTTGTGGGATGGGTAGGGACTAACAAAAGCACACAACC
Viscum album genome assembly, chromosome: 10_4.
OY728166.1:558195265-558195282
GGGTTAGGTTGTGTTCTCATGCAGTAGAGG558195265TCAGTTGTTTCTTGTGGGTCTCGGCAGTTACGTCCCCATGAACGCAAC
Viscum album genome assembly, chromosome: 10_4.
OY728166.1:558240763-558240780
GGGTTAGGTTGTGTTCTCATGCAGTAGAGG558240763TCAGTTGTTTCTTGTGGGTCTCGGCAGTTGCGTCCCCATGAACCCAAC
Leptolyngbya sp. BL0902 chromosome, complete genome.
CP046155.1:2561298-2561315
GTTCTTTAACTGTACTCAATATTTATCTTC2561298TCAGTTGTTTCTTGTGGGGAAAGAGGTGGGCTGTTCGATGCGCGTGGA
Glaucopsyche alexis genome assembly, chromosome: 9.
FR990051.1:15433616-15433633
AAATTGTCAACGACCCACAGGTCTATAGTG15433616TCAGTTGTTTCTTGTGGGCGTTACGAACAGTGGTATTACCGACTATTA
Marthasterias glacialis genome assembly, chromosome: 17.
OU452235.1:9261945-9261962
GCCAAGCGGCCTTGTGCACTGGACTCGGAC9261945TCAGTTGTTTCTTGTGGGTTTGAATCTCGGTCTTGACACTTAACAGTT
Piscicola geometra genome assembly, chromosome: 4.
OX030958.1:833554-833571
ATCAATGAGGAGAACTCTGGATTCAATGCT833554TCAGTTGTTTCTTGTGGGCTGACCTTGATTGTGCCAGTGCCTCATTTG
Piscicola geometra genome assembly, chromosome: 10.
OX030964.1:1021362-1021379
ATCAACGAGGAGAAATCTGGATTAAATGCT1021362TCAGTTGTTTCTTGTGGGCTCAACTTGATTGTGCCAGTGCCGAAAGAG
Dysmachus trigonus genome assembly, chromosome: 1.
OX454319.1:53177621-53177638
GTTTTATTGTGTCGGTTAGGAATTCTATCG53177621TCAGTTGTTTCTTGTGGGGGGGGTAGCTTTCTCTGCACATTCCGTGAC
Aspidapion aeneum genome assembly, chromosome: 7.
OY755044.1:14776053-14776070
TCTAAAAAAAAACTAAAGGCCAAATTTATT14776053TCAGTTGTTTCTTGTGGGCGAATCTAATGAAAAAAGCGTTTTAAAATG
Anania hortulata genome assembly, chromosome: 8.
OY756395.1:12054451-12054468
TACCTATAATGCCTCCAGTTAATACCAATT12054451TCAGTTGTTTCTTGTGGGATTTAGAAAATCCGCATAGCCCTTATCAAG
Elysia crispata genome assembly, chromosome: 9.
OY973774.1:18590770-18590787
GATTTACAGCTACTTGCTTTGCTCGGTAAC18590770TCAGTTGTTTCTTGTGGGACGTGAAGAACTGCTCAGCTGATCTCGCCG
Cepaea hortensis genome assembly, chromosome: 1.
OY992876.1:217875344-217875361
CATCTAACTTCTGTAATCAGTTTACGTTTT217875344TCAGTTGTTTCTTGTGGGACTTGTTCATTGGATTTTCTGTCAGTCCAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCCACAAGAAACAACTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCACAAGAAACAACTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.423 | 0.414 | search_plus_done; http://172.18.8.135:50400/match?q=CCCACAAGAAACAACTGA&k=0&no_gap=0&offset=0&limit=50
0.574 | 0.151 | search_minus_done; http://172.18.8.135:50400/match?q=TCAGTTGTTTCTTGTGGG&k=0&no_gap=0&offset=0&limit=4
0.596 | 0.022 | cgi_end;

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