GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 07:58:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RTWW3_4_A12.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda cDNA clone RTWW3_4_A12_A022 5', mRNA sequence.
CF476942.1:440-459
ATAGGGACAGTGATATCGCTTCTGTTGAAC440CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
RTCNT1_16_B08.g1_A029 Root control Pinus taeda cDNA clone RTCNT1_16_B08_A029 5', mRNA sequence.
CF665520.1:419-438
ATGGGGACAGTGATATCGCTTCTGTTGAAC419CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
HEAT1_52_B10.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_52_B10_A029 3', mRNA sequence.
DR014855.1:175-194
ATGGGGACAGTGATATCGCTTCTGTTGAAC175CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
HEAT1_52_B10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_52_B10_A029 5', mRNA sequence.
DR014937.1:456-475
ATGGGGACAGTGATATCGCTTCTGTTGAAC456CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
STRR1_35_G05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_35_G05_A033 3', mRNA sequence.
DR097532.1:148-167
ATAGGGACAGTGATATCGCTTCTGTTGAAC148CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
STRR1_35_G05.g4_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_35_G05_A033 5', mRNA sequence.
DR097603.1:389-408
ATAGGGACAGTGATATCGCTTCTGTTGAAC389CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
STRR1_76_G01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_76_G01_A033 3', mRNA sequence.
DR101852.1:90-109
ATGGGGACAGTGATATCGCTTCTGTTGAAC90CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
RTPHOS1_16_B05.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone RTPHOS1_16_B05_A029 5', mRNA sequence.
DR167078.1:408-427
ATAGGGACAGTGATATCGCTTCTGTTGAAC408CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
RTHG1_29_C11.b1_A029 Roots plus added mercury Pinus taeda cDNA clone RTHG1_29_C11_A029 3', mRNA sequence.
DR388572.1:148-167
ATAGGGACAGTGATATCGCTTCTGTTGAAC148CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
EST1073961 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWAAM44 3' end, mRNA sequence.
DR683885.1:483-502
ATAGGGACAGTGATATCGCTTCTGTTGAAC483CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
EST1074555 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWAAT15 3' end, mRNA sequence.
DR684478.1:484-503
ATAGGGACAGTGATATCGCTTCTGTTGAAC484CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
EST1146713 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFC62 3' end, mRNA sequence.
DT631782.1:491-510
ATAGGGACAGTGATATCGCTTCTGTTGAAC491CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
PCO011.C21_F04 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO011_F04 5', mRNA sequence.
GT241924.1:486-505
ATAGGGACAGTGATATCGCTTCTGTTGAAC486CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
PCO011.CR_F04 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO011_F04 3', mRNA sequence.
GT242287.1:164-183
ATAGGGACAGTGATATCGCTTCTGTTGAAC164CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
PCO018.C21_L16 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO018_L16 5', mRNA sequence.
GT251813.1:485-504
ATAGGGACAGTGATATCGCTTCTGTTGAAC485CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
PCO018.CR_L16 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO018_L16 3', mRNA sequence.
GT252173.1:113-132
ATAGGGACAGTGATATCGCTTCTGTTGAAC113CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
PBA0119.C21_A10 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0119_A10 5', mRNA sequence.
GW750672.1:545-564
ATAGGGACAGTGATATCGCTTCTGTTGAAC545CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC
Siphonodentalium dalli isolate Sc116.8C chromosome II.
CP136062.1:206164010-206164029
TTGACAAAATTGTTCCAACCACCCTTATTA206164010CCCATGTTTATCTAACAGTCAACACAATAACCCAACACAAATTGAATATA
Siphonodentalium dalli isolate Sc116.8C chromosome II.
CP136062.1:231226663-231226682
GTTGACAAAATTGTTCAAACATCCTTATCA231226663CCCATGTTTATCTAACAGTCAACACTAAATAAGCCAACACAAATCGAATA
Siphonodentalium dalli isolate Sc116.8C chromosome III.
CP136063.1:230643597-230643616
TGTGAAAAAATTGTTCAACCTACATTATCA230643597CCCATGTTTATCTAACAGTCAACATTAAATAAACCGACGCAAATCGAATA
Siphonodentalium dalli isolate Sc116.8C chromosome IV.
CP136064.1:211372790-211372809
GTTAACCAAATTGTTTACACACCCTTATCA211372790CCCATGTTTATCTAACAGTCAAAACTAAATAACCCAACTCAAATTGAATA
Siphonodentalium dalli isolate Sc116.8C chromosome VII.
CP136067.1:7655861-7655880
ACAAAATTTTTTGACCACCCTTTTCTATTA7655861CCCATGTTTATCTAACAGTCAACAATAAATAACCCAACACAAATCGAATA
Siphonodentalium dalli isolate Sc116.8C chromosome VII.
CP136067.1:7662552-7662571
ACAAAATTTTTTGACCACCCTTTTCTATTA7662552CCCATGTTTATCTAACAGTCAACAATAAATAACCCAACACAAATCGAATA
Siphonodentalium dalli isolate Sc116.8C chromosome VIII.
CP136068.1:108853426-108853445
ATTGACAAAATTGTTCAACTACCCTTATCA108853426CCCATGTTTATCTAACAGTCAACACTAAATAACTATATAATCCAACACAA
Siphonodentalium dalli isolate Sc116.8C chromosome VIII.
CP136068.1:135221116-135221135
CCGCCCTTATCACCCATGTTTATCTCACAA135221116CCCATGTTTATCTAACAGTCATTAATAACCCAACACATATTGAATATCAT
Hippopus hippopus genome assembly, chromosome: 3.
OX328098.1:1846338-1846357
TGGTAAAAAGAGAAATTGGTTGCCACAATC1846338CCCATGTTTATCTAACAGTCGTACGATGCTGTCCTAAAAGGTCAAATTCA
Tridacna derasa genome assembly, chromosome: 2.
OY723415.1:1853374-1853393
TGGTAAAAAGAGAAATTGGTTGCCACAATC1853374CCCATGTTTATCTAACAGTCGTACGATGCTGTCCTAAAAGGTCAAATTCA
RTCNT1_53_C11.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_53_C11_A029 3', mRNA sequence.
CF670865.1:257-276
GAGGAAAGGACCTTCTCCTTTAGAAATAGT257GACTGTTAGATAAACATGGGGTTCAACAGAAGCGATATCACTGTCCCTAT
RTS1_2_H09.b1_A029 Roots minus sulfur Pinus taeda cDNA clone RTS1_2_H09_A029 3', mRNA sequence.
DR109493.1:163-182
GAGGAAAGGACCTTCTCCTTTAGAAATAGT163GACTGTTAGATAAACATGGGGTTCAACAGAAGCGATATCACTGTCCCTAT
RTS1_2_H10.b1_A029 Roots minus sulfur Pinus taeda cDNA clone RTS1_2_H10_A029 3', mRNA sequence.
DR109494.1:338-357
GAGGAAAGGACCTTCTCCTTTAGAAATAGT338GACTGTTAGATAAACATGGGGTTCAACAGAAGCGATATCACTGTCCCTAT
PBA0119.CR_A10 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0119_A10 3', mRNA sequence.
GW751042.1:663-682
GAGGAAAGGACCTTCTCCTTTAGAAATAGT663GACTGTTAGATAAACATGGGGTTCAACAGAAGCGATATCACTGTCCCTAT
Siphonodentalium dalli isolate Sc116.8C chromosome II.
CP136062.1:207022447-207022466
AATATATAATTAATATATTCAATTTGTGTT207022447GACTGTTAGATAAACATGGGTAGTAAGGGTGGTTGGAACAATTTTGTCAA
Siphonodentalium dalli isolate Sc116.8C chromosome VIII.
CP136068.1:133417834-133417853
TATTCGATTTTAGTGGGGTTATTTAGTGTT133417834GACTGTTAGATAAACATGGGTGATAAGGGTGGTTGAACAATTTTGCAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCCATGTTTATCTAACAGTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCATGTTTATCTAACAGTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.993 | 0.984 | search_plus_done; http://172.18.8.135:50400/match?q=CCCATGTTTATCTAACAGTC&k=0&no_gap=0&offset=0&limit=50
1.249 | 0.256 | search_minus_done; http://172.18.8.135:50400/match?q=GACTGTTAGATAAACATGGG&k=0&no_gap=0&offset=0&limit=23
1.253 | 0.004 | cgi_end;

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