GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 03:14:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

946036F05.x1 946 - tassel primordium prepared by Schmidt lab Zea mays cDNA, mRNA sequence.
BE639626.1:439-458
ATGGGATAGCCATCCATGTCCGGAGGGGTG439CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
947039B09.x1 947 - 2 week shoot from Barkan lab Zea mays cDNA, mRNA sequence.
BG349945.1:421-440
ATGGGATAGCCATCCATGTCCGGAGGGGTG421CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
947072D02.x1 947 - 2 week shoot from Barkan lab Zea mays cDNA, mRNA sequence.
BG549024.1:374-393
ATGGGATAGCCATCCATGTCCGGAGGGGTG374CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
947079H08.x3 947 - 2 week shoot from Barkan lab Zea mays cDNA, mRNA sequence.
BG549979.1:406-425
ATGGGATAGCCATCCATGTCCGGAGGGGTG406CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
947039B09.x2 947 - 2 week shoot from Barkan lab Zea mays cDNA, mRNA sequence.
BG550275.1:415-434
ATGGGATAGCCATCCATGTCCGGAGGGGTG415CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
1091068B08.x1 1091 - Immature ear with common ESTs screened by Schmidt lab Zea mays cDNA, mRNA sequence.
BU093106.1:447-466
ATGGGATAGCCATCCATGTCCGGAGGGGTG447CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
3529_1_66_1_C07.x_1 3529 - 2 mm ear tissue from Schmidt and Hake labs Zea mays cDNA, mRNA sequence.
CB616895.1:359-378
ATGGGATAGCCATCCATGTCCGGAGGGGTG359CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
3530_1_193_1_E08.x_1 3530 - Full length cDNA library created by Invitrogen from multiple tissues Zea mays cDNA, mRNA sequence.
CO529282.1:546-565
ATGGGATAGCCATCCATGTCCGGATGGGTG546CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
ZM_BFb0009E10.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
DR790338.1:363-382
ATGGGATAGCCATCCATGTCCGGAGGGGTG363CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
ZM_BFb0015B12.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
DR794388.1:487-506
ATGGGATAGCCATCCATGTCCGGAGGGGTG487CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
ZM_BFb0147O12.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
DV026745.1:468-487
ATGGGATAGCCATCCATGTCCGGAGGGGTG468CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
ZM_BFb0160O24.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
DV164463.1:427-446
ATGGGATAGCCATCCATGTCCGGAGGGGTG427CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
ZM_BFb0209H05.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
DV523292.1:353-372
ATGGGATAGCCATCCATGTCCGGAGGGGTG353CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
IV-1091-405C-G07.T7-1 UGIV-1091-Reseq Zea mays cDNA, mRNA sequence.
DV621419.1:492-511
ATGGGATAGCCATCCATGTCCGGAGGGGTG492CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
1000169b-F04.T7-1 UGI-Reseq Zea mays cDNA, mRNA sequence.
DV942463.1:464-483
ATGGGATAGCCATCCATGTCCGGAGGGGTG464CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
ZM_BFb0349H14.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
EB704177.1:353-372
ATGGGATAGCCATCCATGTCCGGAGGGGTG353CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
ZM_BFb0353C13.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
EB706466.1:583-602
ATGGGATAGCCATCCATGTCCGGATGGGTG583CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGA
ZM_BFb0374B19.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
EB817689.1:544-563
ATGGGATAGCCATCCATGTCCGGATGGGTG544CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
zmrsub1_0B10-018-a12.s4 zmrsub1 Zea mays cDNA 3', mRNA sequence.
EE679851.1:487-506
ATGGGATAGCCATCCATGTCCGGAGGGGTG487CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
CLS_CLiFpEfSpn_55a8_1_d04cLibkit3LD_B02 CLS_CLiFpEfSPn_plant Festuca pratensis cDNA clone 55d04 3', mRNA sequence.
GO867833.1:357-376
ATGAGGTATCCATCCATGTCAGCAGGTGTG357CCCTTCAGGATGCTTGTGATGCAGCTACTGCCACCATGGAGCTCCTGTTC
CLS_CLiFpEfSpn_58a7_1_n21cLibkit3LD_G11 CLS_CLiFpEfSPn_plant Festuca pratensis cDNA clone 58n21 3', mRNA sequence.
GO869796.1:528-547
ATGAGGTATCCATCCATGTCAGCAGGTGTG528CCCTTCAGGATGCTTGTGATGCAGCTACTGCCACCATGAAGCTCCTGTTC
CCOX3947.g1 CCOX Avena barbata root, pooled from different levels of rain and nitrogen (H) Avena barbata cDNA clone CCOX3947 3', mRNA sequence.
GR348799.1:499-518
ATGAGGTATCCATCCATGTCAGCAGGTGTG499CCCTTCAGGATGCTTGTGATGCAGCTACTGCCACCATGAAGCTCCTGTTC
CCXG1231.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG1231 3', mRNA sequence.
GT784031.1:513-532
ATGAGGTGTCCATCCATGTCAACAGGCATG513CCCTTCAGGATGCTTGTGATGCAGTTACTGCCACCATGAAGCTCCTGCTC
CCXG5171.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG5171 3', mRNA sequence.
GT791204.1:513-532
ATAAGGTATCCATCCATGTCAACAGGCATG513CCCTTCAGGATGCTTGTGATGCAGTTACTGCCACCATGAAGCTCCTGCTC
CCXG7247.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG7247 3', mRNA sequence.
GT795045.1:505-524
ATGAGGTATCCATCCATGTCAACAGGCATG505CCCTTCAGGATGCTTGTGATGCAGTTACTGCCACCATGAAGCTCCTGCTC
CCXG8165.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG8165 3', mRNA sequence.
GT796673.1:513-532
ATGAGGTATCCATCCATGTCAACAGGCATG513CCCTTCAGGATGCTTGTGATGCAGTTACTGCCACCATGAAGCTCCTGCTC
CCXG8214.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG8214 3', mRNA sequence.
GT796776.1:502-521
ATGAGGTATCCATCCATGTCAACAGGCATG502CCCTTCAGGATGCTTGTGATGCAGTTACTGCCACCATGAAGCTCCTGCTC
CCXG8335.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG8335 3', mRNA sequence.
GT797018.1:534-553
ATGAGGTATCCATCCATGTCAACAGGCATG534CCCTTCAGGATGCTTGTGATGCAGTTACTGCCACCATGAAGCTCCTGCTC
CCXG11086.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG11086 3', mRNA sequence.
GT801508.1:385-404
ATGAGGTATCCATCCATGTCAACAGGCATG385CCCTTCAGGATGCTTGTGATGCAGTTACTGC
CCXG12585.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG12585 3', mRNA sequence.
GT804170.1:549-568
ATGAGGTATCCATCCATGTCAACAGGCATG549CCCTTCAGGATGCTTGTGATGCAGTTACTGCCACCATGAAGCTCCTGCTC
CCXG16003.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG16003 3', mRNA sequence.
GT810197.1:93-112
ATGAGGTATCCATCCATGTCAACAGGCATG93CCCTTCAGGATGCTTGTGATGCAGTTACTGCCACCATGAAGCTCCTGCTC
CCYO3509.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDNA clone CCYO3509 3', mRNA sequence.
GT816313.1:495-514
ATGAGGTATCCATCCATGTCAACAGGCATG495CCCTTCAGGATGCTTGTGATGCAGTTACTGCCACCATGAAGCTCCTGCTC
CCYO5450.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDNA clone CCYO5450 3', mRNA sequence.
GT819383.1:513-532
ATGAGGTATCCATCCATGTCAACAGGCATG513CCCTTCAGGATGCTTGTGATGCAGTTACT
CCYP15738.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA clone CCYP15738 3', mRNA sequence.
GT863791.1:365-384
ATGAGGTATCCATCCATGTCAACAGGCATG365CCCTTCAGGATGCTTGTGATGCAGTTACTGCCACCATGAAGCTCCTGCTC
BG04066B1B03.r1 BG04- primary and normalized libraries Dactylis glomerata cDNA, mRNA sequence.
HO152773.1:446-465
ATGAGGTATCTATCCATGTCAGCAGGCGTG446CCCTTCAGGATGCTTGTGATGCAGCTACTGCCACCATGAAGCTCCTGTTC
BG04083B2B05.r1 BG04- primary and normalized libraries Dactylis glomerata cDNA, mRNA sequence.
HO165598.1:416-435
ATGAGGTATCTATCCATGTCAGCAGGCGTG416CCCTTCAGGATGCTTGTGATGCAGCTACTGCCACCATGAAGCTCCTGTTC
ZMMBBb0177M07.r ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0177M07 3', genomic survey sequence.
CC829523.1:198-217
ATGGGATAGCCATCCATGTCCGGATGGGTG198CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
ZMMBHf0001e22.r ZMMBHf Zea mays genomic clone ZMMBHf0001e22 3', genomic survey sequence.
CL990546.1:11-30
CGGATGGGTG11CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
ZMMBBb0177M07.rq ZMMBB_VAL Zea mays genomic clone ZMMBBb0177M07 3', genomic survey sequence.
ED797791.1:314-333
ATGGGATAGCCATCCATGTCCGGATGGGTG314CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
Zea mays cultivar B73 chromosome 1 clone CH201-373C2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.
AC186284.4:65056-65075
ATGGGATAGCCATCCATGTCCGGAGGGGTG65056CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
Zea mays cultivar LT2357 chromosome 1.
CP116739.1:154785181-154785200
ATGGGATAGCCATCCATGTCCGGAGGGGTG154785181CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
Paspalum notatum var. saurae isolate R1 chromosome 08.
CP144752.1:40830356-40830375
ATGGGATAGCCATCCATGTCTGGAGGGGTG40830356CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGCCC
Zea mays genome assembly, chromosome: 1.
LR897967.1:156697090-156697109
ATGGGATAGCCATCCATGTCCGGAGGGGTG156697090CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACCATGAAGCTCCTGTCC
Digitaria exilis genome assembly, chromosome: 3A.
LR994608.1:37632310-37632329
ATGGGATAGCCATCCATGTCCGGAGGGTTG37632310CCCTTCAGGATGCTTGTGATGGAGCCACTACCACCATGAAGCTCCTGCCC
Digitaria exilis genome assembly, chromosome: 3B.
LR994609.1:37024753-37024772
ATGGGATAGCCATCCATGTCCGGAGGGTTG37024753CCCTTCAGGATGCTTGTGATGGAGCCACTACCACCATGAAGCTCCTGCCC
Avena insularis genome assembly, chromosome: 5C.
OU342342.1:150481114-150481133
ATGAGGTATCCATCCATGTCAGCAGGTGTG150481114CCCTTCAGGATGCTTGTGATGCAGCTACTGCCACCATGAAGCTCCTGTTC
Avena insularis genome assembly, chromosome: 5D.
OU342349.1:107572565-107572584
ATGAGGTATCCATCCATGTCAGCAGGTGTG107572565CCCTTCAGGATGCTTGTGATGCAGCTACTGCCACCATGAAGCTCCTGTTC
Avena sativa genome assembly, chromosome: 5A.
OU342382.1:146594633-146594652
ATGAGGTATCCATCCATGTCAGCAGGTGTG146594633CCCTTCAGGATGCTTGTGATGCAGCTACTGCCACCATGCAGCTCCTGTTC
Avena sativa genome assembly, chromosome: 5C.
OU342389.1:144132120-144132139
ATGAGGTATCCATCCATGTCAGCAGGTGTG144132120CCCTTCAGGATGCTTGTGATGCAGCTACTGCCACCATGAAGCTCCTGTTC
Avena atlantica genome assembly, chromosome: 5A.
OU342737.1:201621000-201621019
ATGAGGTATCCATCCATGTCAGCAGGTGTG201621000CCCTTCAGGATGCTTGTGATGCAGCTACTGCCACCATGAAGCTCCTGTTC
Avena eriantha genome assembly, chromosome: 5C.
OU342744.1:280768550-280768569
ATGAGGTATCCATCCATGTCAGCAGGTGTG280768550CCCTTCAGGATGCTTGTGATGCAGCTACTGCCACCATGAAGTTCCTGTTC
Avena longiglumis genome assembly, chromosome: 5A.
OU342751.1:208992152-208992171
ATGAGGTATCCATCCATGTCAGCAGGTGTG208992152CCCTTCAGGATGCTTGTGATGCAGCTACTGCCACCATGAAGCTCCTGTTC
Avena sativa genome assembly, chromosome: 5.
OV702283.1:143008066-143008085
ATGAGGTATCCATCCATGTCAGCAGGTGTG143008066CCCTTCAGGATGCTTGTGATGCAGCTACTGCCACCATGCAGCTCCTGTTC
Avena sativa genome assembly, chromosome: 12.
OV702290.1:151612867-151612886
ATGAGGTATCCATCCATGTCAGCAGGTGTG151612867CCCTTCAGGATGCTTGTGATGCAGCTACTGCCACCATGAAGCTCCTGTTC
Phragmites australis genome assembly, chromosome: 23.
OY282634.1:19913426-19913445
ATGGGATATCCATCCATGTTGGGAGCGGTG19913426CCCTTCAGGATGCTTGTGATGCAGCCACTGCCACAATGAAGCTCCTGTCC
Sepia lycidas genome assembly, chromosome: 42.
OZ010612.1:30980164-30980183
TTCTTCTTCTTCTTCTTCTATGTGTCGTAT30980164CCCTTCAGGATGCTTGTGATCATGGCCCTCCAAATTTTCTTCGTCTTCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCCTTCAGGATGCTTGTGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCTTCAGGATGCTTGTGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.234 | 2.225 | search_plus_done; http://172.18.8.135:50400/match?q=CCCTTCAGGATGCTTGTGAT&k=0&no_gap=0&offset=0&limit=50
2.287 | 0.053 | search_minus_done; http://172.18.8.135:50400/match?q=ATCACAAGCATCCTGAAGGG&k=0&no_gap=0&offset=0&limit=0
2.287 | 0.000 | cgi_end;

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