GGGenome | Results

2025-03-27 20:16:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
AP015044.1:7367355-7367374

CCCAACCCATTCCAGCCACCAAGCCCACCA7367355CCCTTCATCCCTAACCCATTCCAGCCTCCTCCAAGCCCACATGCACCCTT

Lathyrus sativus genome assembly, chromosome: 3.
OZ012737.1:661869916-661869935

AAAATAAAAAAGAAGTTGAAATCGTATGTT661869916CCCTTCATCCCTAACCCATTATTCAAATTTTCATTTCAATGATTTTCTAT

4_Tbi_b3v08.
OD564837.1:50730-50749

GCCACCCAGCGAGGAAGATCCAGCCCCTTT50730CCCTTCATCCCTAACCCATTATCAACGTCCCAAAATGTTAACATCTACTG

5_Tge_b3v08.
OE846072.1:7923-7942

CTACATTCCTCTAAATATAACCTTCCTCAT7923CCCTTCATCCCTAACCCATTAATGTAATTAGTACATAATCGTATGACCCG

Vigna angularis mRNA, clone: VES05H24.
HX944155.1:538-557

AAGGGTGCATGTGGGCTTGGAGGAGGCTGG538AATGGGTTAGGGATGAAGGGTGGTGGGCTTGGTGGCTGGAATGGGTTGGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.212 | 0.203 | search_plus_done; http://172.18.8.135:50400/match?q=CCCTTCATCCCTAACCCATT&k=0&no_gap=0&offset=0&limit=50
0.323 | 0.111 | search_minus_done; http://172.18.8.135:50400/match?q=AATGGGTTAGGGATGAAGGG&k=0&no_gap=0&offset=0&limit=46
0.324 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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