GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 21:41:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB020O15R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB020O15, genomic survey sequence.
DX025807.1:485-506
TGTGCCCCCACCAAACAAATCAGAAACAAA485CCGGAACAAGTGGACCGGAAATCCATGATTAAATAGTTGGTCTAGTTACTTG
KBrB075B12F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB075B12, genomic survey sequence.
DX066867.1:481-502
TGTGCCCCCACCAAACAAATCAGAAACAAA481CCGGAACAAGTGGACCGGAAATCCATGATTAAATAGTTGGTCTAGTTACTTG
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69317974-69317995
TGTGCCCCCACCAAACAAATCAGAAACAAA69317974CCGGAACAAGTGGACCGGAAATCCATGATTAAATAGTTGGTCTAGTTACTTG
Brassica oleracea var. italica Pp523 downy mildew resistance gene-linked marker OPJ19_550 genomic sequence.
DQ459310.1:107-128
TGTGCCCCCACCAAACAAATCAGAAACAAA107CCGGAACAAGTGGACCGGAAATCCATGGTTAATTAGTTGGTCTAGTTACATG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:53244267-53244288
TGTGCCCCCACCAAGCAAATCAGAAACAAA53244267CCGGAACAAGTGGACCGGAAATCCATGGTTAATTAGTTGGTCTAGTTACATG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41416005-41416026
TGTGCCCCCACCAAGCAAATCAGAAACAAA41416005CCGGAACAAGTGGACCGGAAATCCATGGTTAATTAGTTGGTCTAGTTACATG
Brassica rapa genome, scaffold: A09.
LR031568.1:57405142-57405163
TGTGCCCCCACCAAACAAATCAGAAACAAA57405142CCGGAACAAGTGGACCGGAAATCCATGATTAAATAGTTGGTCTAGTTACTTG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50665461-50665482
TGTGCCCCCACCAAACAAATCAGAAACAAA50665461CCGGAACAAGTGGACCGGAAATCCATGGTTAATTAGTTGGTCTAGTTACATG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a011O10_T7.
AM390354.1:415-436
CATGTAACTAGACCAACTAATTAACCATGG415ATTTCCGGTCCACTTGTTCCGGTTTGTTTCTGATTTGTTTGGTGGGGGCACA
Brassica oleracea var. viridis mRNA, clone: KALE-033P19, 5' end sequence.
DK468538.1:313-334
CATGTAACTAGACCAACTAATTAACCATGG313ATTTCCGGTCCACTTGTTCCGGTTTGTTTCTGATTTGTTTGGTGGGGGCACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB046G18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189365.2:49480-49501
CAAGTAACTAGACCAACTATTTAATCATGG49480ATTTCCGGTCCACTTGTTCCGGTTTGTTTCTGATTTGTTTGGTGGGGGCACA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:260457-260478
CATGTAACTAGACCAACTAATTAACCATGG260457ATTTCCGGTCCACTTGTTCCGGTTTGTTTCTGATTTGCTTGGTGGGGGCACA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:36847678-36847699
CAAGTAACTAGACCAACTATTTAATCATGG36847678ATTTCCGGTCCACTTGTTCCGGTTTGTTTCTGATTTGTTTGGTGGGGGCACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCGGAACAAGTGGACCGGAAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGGAACAAGTGGACCGGAAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.159 | 0.150 | search_plus_done; http://172.18.8.135:50400/match?q=CCGGAACAAGTGGACCGGAAAT&k=0&no_gap=0&offset=0&limit=50
0.222 | 0.063 | search_minus_done; http://172.18.8.135:50400/match?q=ATTTCCGGTCCACTTGTTCCGG&k=0&no_gap=0&offset=0&limit=42
0.225 | 0.003 | cgi_end;

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