GGGenome | Results

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2025-04-17 00:42:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Lotus japonicus genomic DNA, chromosome 5, clone: LjT34B21, TM1598.
AP008175.2:70766-70785

TTGTAACTCTACTCCTTCTAATTCTGAATT70766CCGGGCTACAGTTCAATAAGTTTTGAAATAGAAAGGAAAAAAAAGTATTG

Lotus japonicus B-129 DNA, chromosome 5, complete sequence.
AP022633.1:53927922-53927941

TTGTAACTCTACTCCTTCTAATTCTGAATT53927922CCGGGCTACAGTTCAATAAGTTTTGAAATAGAAAGGAAAAAAAAGTATTG

Lotus japonicus genomic DNA, chromosome 5, clone: LjB16B21, BM1888.
AP010554.1:75326-75345

CAATACTTTTTTTTCCTTTCTATTTCAAAA75326CTTATTGAACTGTAGCCCGGAATTCAGAATTAGAAGGAGTAGAGTTACAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=CCGGGCTACAGTTCAATAAG&k=0&no_gap=0&offset=0&limit=50
0.135 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=CTTATTGAACTGTAGCCCGG&k=0&no_gap=0&offset=0&limit=48
0.136 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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