GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 08:34:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022F09, complete sequence.
AC240998.1:48425-48447
TGTTGAAGACTAACATCACATTATTCACAA48425CCGTACAAAGAGTTCTTCTCACCAAATCTTTTGACTCTTGTGAAATCTACATT
KBrB046B17F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB046B17, genomic survey sequence.
DX044954.1:450-472
AATGTAGATTTCACAAGAGTCAAAAGATTT450GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTTCAACA
KBrH050O17F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH050O17, genomic survey sequence.
DX913031.1:264-286
AATGTAGATTTCACAAGAGTCAAAAGATTT264GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTTCAACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB009G06, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces.
AC240986.1:1184-1206
AATGTAGATTTCACAAGAGTCAAAAGATTT1184GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTTCAACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070G10, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.
AC241060.1:26882-26904
AATGTAGATTTCACAAGAGTCAAAAGATTT26882GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTTCAACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006C14, complete sequence.
AC189554.2:133817-133839
AATGTAGATTTCACAAGAGTCAAAAGATTT133817GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTTCAACA
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:1647788-1647810
AATGTAGATTTCACAAGAGTCAAAAGATTT1647788GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTCCAACA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:1700616-1700638
AATGTAGATTTCACAAGAGTCAAAAGATTT1700616GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTCCAACA
Brassica rapa genome, scaffold: A03.
LR031572.1:1649085-1649107
AATGTAGATTTCACAAGAGTCAAAAGATTT1649085GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTTCAACA
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:1649933-1649955
AATGTAGATTTCACAAGAGTCAAAAGATTT1649933GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTTCAACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCGTACAAAGAGTTCTTCTCACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGTACAAAGAGTTCTTCTCACC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.101 | 0.093 | search_plus_done; http://172.18.8.135:50400/match?q=CCGTACAAAGAGTTCTTCTCACC&k=0&no_gap=0&offset=0&limit=50
0.178 | 0.077 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGAGAAGAACTCTTTGTACGG&k=0&no_gap=0&offset=0&limit=49
0.183 | 0.006 | cgi_end;

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