GGGenome | Results

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2025-04-16 20:59:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Cannabis sativa PK00387.1_1.CasaPuKu mRNA sequence.
JP449529.1:703-722

AAAAAGTTGAAGCTAAAGATGGAGAAATTG703CCTCAACCTGCCCTATTATGAGGAGCACCGGCTAGTACTTTAGTACTACT

Parietaria judaica genome assembly, chromosome: 3.
OX940862.1:2795090-2795109

ATCATGCGATGGGAAATCCAGCCAAACACT2795090CCTCAACCTGCCCTATTATGAAAATTTTGTCTTCCACGGGATAGAATATG

Mesorhizobium sp. M7D.F.Ca.US.005.01.1.1 chromosome.
CP034453.1:5351664-5351683

TGTCGTCGTCGAGGTCGGCTTCGGCTCGGG5351664CCTCAACCTGCCCTATTATGACGCCGCCAGGGTGGAGCGGCTGGTCGGCG

Mesorhizobium sp. 113-3-3 DNA, complete genome.
AP023243.1:3026319-3026338

TGCCGACCAGCCGCTCGACCCTGGCGGCGT3026319CATAATAGGGCAGGTTGAGGCCCGAGCCGAAGCCGACCTCGACGACGACG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.126 | 0.116 | search_plus_done; http://172.18.8.135:50400/match?q=CCTCAACCTGCCCTATTATG&k=0&no_gap=0&offset=0&limit=50
0.153 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=CATAATAGGGCAGGTTGAGG&k=0&no_gap=0&offset=0&limit=47
0.154 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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