GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 15:50:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:22696851-22696870
GCAAGTTTAGGGAGTAGATAAGAAGCGCTC22696851CCTCAATAAGCGGAAATGGAAAGAAAGAAAAAAAAAATACAAACTACAAC
Brassica napus genome assembly, chromosome: A03.
HG994357.1:22679074-22679093
GCAAGTTTAGGGAGTAGATAAGAAGCGCTC22679074CCTCAATAAGCGGAAATGGAAAGAAAGAAAAAAAAAATACAAACTACAAC
Brassica napus genome assembly, chromosome: C07.
HG994371.1:46031228-46031247
GCAAGTTTAGGGAGTAGATAAGAAGCGCTC46031228CCTCAATAAGCGGAAATGGAAAGAAAAAAAAAAAAATACAAACTACAACG
Brassica rapa genome, scaffold: A03.
LR031572.1:22453157-22453176
GCAAGTTTAGGGAGTAGATAAGAAGCGCTC22453157CCTCAATAAGCGGAAATGGAAAGAAAGAAAAAAAAAATACAAACTACAAC
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:48880608-48880627
GCAAGTTTAGGGAGTAGATAAGAAGCGCTC48880608CCTCAATAAGCGGAAATGGAAAGAAAAAAAAAAAATACAAACTACAACGG
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:22581176-22581195
GCAAGTTTAGGGAGTAGATAAGAAGCGCTC22581176CCTCAATAAGCGGAAATGGAAAGAAAGAAAAAAAAAATACAAACTACAAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence.
AC189627.2:50756-50775
AGCCGTTGTAGTTTGTATTTTTTTTTTCTT50756TCCATTTCCGCTTATTGAGGGAGCGCTTCTTATCTACTCCCTAAACTTGC
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:9770006-9770025
CGTTGTAGTTTGTATTTTTTTTTTTTTCTT9770006TCCATTTCCGCTTATTGAGGGAGCGCTTCTTATCTACTCCCTAAACTTGC
Staphylococcus capitis strain FDAARGOS_753 chromosome, complete genome.
CP053957.1:899982-900001
ACATGAATTAGGTACAGTTGGTATGGTGTG899982TCCATTTCCGCTTATTGAGGCACAAAAGAAAATGGAAGAGTTAAATCAAG
Staphylococcus capitis subsp. capitis strain DSM 20326 chromosome, complete genome.
CP103049.1:838556-838575
ACATGAATTAGGTACAGTTGGTATGGTGTG838556TCCATTTCCGCTTATTGAGGCACAAAAGAAAATGGAAGAGTTAAATCAAG
Staphylococcus capitis strain CCSM0123 chromosome, complete genome.
CP110784.1:863955-863974
ACATGAATTAGGTACAGTTGGTATGGTGTG863955TCCATTTCCGCTTATTGAGGCACAAAAGAAAATGGAAGAGTTAAATCAAG
Staphylococcus capitis strain ADJXA chromosome, complete genome.
CP134823.1:839759-839778
ACATGAATTAGGTACAGTTGGTATGGTGTG839759TCCATTTCCGCTTATTGAGGCACAAAAGAAAATGGAAGAGTTAAATCAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTCAATAAGCGGAAATGGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTCAATAAGCGGAAATGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.117 | 0.108 | search_plus_done; http://172.18.8.135:50400/match?q=CCTCAATAAGCGGAAATGGA&k=0&no_gap=0&offset=0&limit=50
0.138 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=TCCATTTCCGCTTATTGAGG&k=0&no_gap=0&offset=0&limit=44
0.142 | 0.004 | cgi_end;

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