GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 05:37:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 1 from patent US 5756324.
AR009598.1:375-394
AAGAGCGCAAACCTGAAGCTCAAGCAATCC375CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
Sequence 5 from patent US 5756324.
AR009601.1:1542-1561
AAGAGCGCAAACCTGAAGCTCAAGCAATCC1542CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
Sequence 1 from patent US 5633438.
I44058.1:375-394
AAGAGCGCAAACCTGAAGCTCAAGCAATCC375CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
Sequence 5 from patent US 5633438.
I44061.1:1542-1561
AAGAGCGCAAACCTGAAGCTCAAGCAATCC1542CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a018M15_T7.
AM391815.1:424-443
AAGAGCGCAAACCTGAAGCTCAAGCAATCC424CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
BN40.047F02F020102 BN40 Brassica napus cDNA clone BN40047F02, mRNA sequence.
CD830928.1:435-454
AAGAGCGCAAACCTGAAGCTCAAGCAATCC435CCTGACACTGCTCACTACGACGTTGGGTCTTCGACCGACCAGATGAAGCG
RFO2.111E07F010523 RFO2 Brassica napus cDNA clone RFO2111E07, mRNA sequence.
CD838445.1:464-483
AAGAGCGCAAACCTGAAGCTCAAGCAATCC464CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
RFO2.115G13F010529 RFO2 Brassica napus cDNA clone RFO2115G13, mRNA sequence.
CD839456.1:436-455
AAGAGCGCAAACGTGAAGCTCAAGGAATCC436CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
RFO2.116C17F010622 RFO2 Brassica napus cDNA clone RFO2116C17, mRNA sequence.
CD839663.1:435-454
AAGAGCGCAAACCTGAAGCTCAAGCAATCC435CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
RFO2.118A10F010601 RFO2 Brassica napus cDNA clone RFO2118A10, mRNA sequence.
CD840109.1:435-454
AAGAGCGCAAACGTGAAGCTCAAGGAATCC435CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
RFO2.121K19F010607 RFO2 Brassica napus cDNA clone RFO2121K19, mRNA sequence.
CD841059.1:434-453
AAGAGCGCAAACGTGAAGCTCAAGGAATCC434CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
RFO2.122K23F010614 RFO2 Brassica napus cDNA clone RFO2122K23, mRNA sequence.
CD841322.1:433-452
AAGAGCGCAAACCTGAAGCTCAAGCAATCC433CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
RFO2.122N12F010618 RFO2 Brassica napus cDNA clone RFO2122N12, mRNA sequence.
CD841361.1:434-453
AAGAGCGCAAACGTGAAGCTCAAGGAATCC434CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
RFO2.124G16F010621 RFO2 Brassica napus cDNA clone RFO2124G16, mRNA sequence.
CD841731.1:459-478
AAGAGCGCAAACCTGAAGCTCAAGCAATCC459CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
RFO2.130B23F011011 RFO2 Brassica napus cDNA clone RFO2130B23, mRNA sequence.
CD843016.1:436-455
AAGAGCGCAAACGTGAAGCTCAAGGAATCC436CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
RFO2.131D11F011012 RFO2 Brassica napus cDNA clone RFO2131D11, mRNA sequence.
CD843258.1:432-451
AAGAGCGCAAACGTGAAGCTCAAGGAATCC432CCTGACACTGCTCACTACGACGTTNGGTCTTCGACCGACCAGATGAAGCG
RFO2.132B07F010924 RFO2 Brassica napus cDNA clone RFO2132B07, mRNA sequence.
CD843443.1:425-444
AAGAGCGCAAACGTGAAGCTCAAGGAATCC425CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
RFO2.132D05F010924 RFO2 Brassica napus cDNA clone RFO2132D05, mRNA sequence.
CD843462.1:441-460
AAGAGCGCAAACGTGAAGCTCAAGGAATCC441CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
RFO2.134M21F011011 RFO2 Brassica napus cDNA clone RFO2134M21, mRNA sequence.
CD843962.1:434-453
AAGAGCGCAAACCTGAAGCTCAAGCAGTCC434CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
RFO2.139I13F011221 RFO2 Brassica napus cDNA clone RFO2139I13, mRNA sequence.
CD844642.1:435-454
AAGAGCGCAAACCTGAAGCTCAAGCAATCC435CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
RFO2.140P19F011226 RFO2 Brassica napus cDNA clone RFO2140P19, mRNA sequence.
CD844944.1:433-452
AAGAGCGCAAACCTGAAGCTCAAGCAATCC433CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
RFO2.142E12F011227 RFO2 Brassica napus cDNA clone RFO2142E12, mRNA sequence.
CD845232.1:458-477
AAGAGCGCAAACGTGAAGCTCAAGGAATCC458CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
12JKBNM1_UP_002_B01_19NOV2003_013 12JKBNM1 Brassica napus cDNA 5', mRNA sequence.
CN727780.1:436-455
AAGAGCGCAAACGTGAAGCTCAAGGAATCC436CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
12JKBNM1_UP_002_E03_19NOV2003_023 12JKBNM1 Brassica napus cDNA 5', mRNA sequence.
CN727817.1:434-453
AAGAGCGCAAACCTGAAGCTCAAGCAATCC434CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
12JKBNM1_UP_002_H05_19NOV2003_033 12JKBNM1 Brassica napus cDNA 5', mRNA sequence.
CN727855.1:139-158
AAGAGCGCAAACGTGAAGCTCAAGGAATCC139CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
12JKBNM1_UP_003_A03_19NOV2003_031 12JKBNM1 Brassica napus cDNA 5', mRNA sequence.
CN727864.1:435-454
AAGAGCGCAAACGTGAAGCTCAAGGAATCC435CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
12JKBNM1_UP_003_A07_19NOV2003_063 12JKBNM1 Brassica napus cDNA 5', mRNA sequence.
CN727868.1:434-453
AAGAGCGCAAACCTGAAGCTCAAGCAATCC434CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
12JKBNM1_UP_003_C06_19NOV2003_044 12JKBNM1 Brassica napus cDNA 5', mRNA sequence.
CN727890.1:434-453
AAGAGCGCAAACCTGAAGCTCAAGCAATCC434CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
12JKBNM1_UP_004_C04_19NOV2003_028 12JKBNM1 Brassica napus cDNA 5', mRNA sequence.
CN727979.1:144-163
AAGAGCGCAAACGTGAAGCTCAAGGAATCC144CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
13JKBNM2_UP_001_A01_21NOV2003_015 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
CN728094.1:434-453
AAGAGCGCAAACCTGAAGCTCAAGCAATCC434CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
13JKBNM2_UP_001_A04_21NOV2003_032 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
CN728097.1:23-42
AAACGTGAAGCTCAAGGAATCC23CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
13JKBNM2_UP_001_C08_21NOV2003_060 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
CN728123.1:185-204
AAGAGTGCAAACCTGAAGCTCAAGCAATCC185CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
13JKBNM2_UP_002_A11_21NOV2003_095 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
CN728198.1:145-164
AAGAGCGCAAACGTGAAGCTCAAGGAATCC145CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
13JKBNM2_UP_002_B02_21NOV2003_014 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
CN728201.1:142-161
AAGAGCGCAAACCTGAAGCTCAAGCAATCC142CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
13JKBNM2_UP_002_B08_21NOV2003_062 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
CN728207.1:143-162
AAGAGCGCAAACGTGAAGCTCAAGGAATCC143CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
13JKBNM2_UP_002_F01_21NOV2003_005 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
CN728248.1:138-157
AAGAGCGCAAACCTGAAGCTCAAGCAATCC138CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
13JKBNM2_UP_002_F06_21NOV2003_038 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
CN728253.1:138-157
AAGAGCGCAAACGTGAAGCTCAAGGAATCC138CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
13JKBNM2_UP_003_B08_21NOV2003_062 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
CN728301.1:139-158
AAGAGCGCAAACCTGAAGCTCAAGCAATCC139CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
13JKBNM2_UP_004_A12_21NOV2003_096 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
CN728385.1:334-353
AAGAGCGCAAACCTGAAGCTCAAGCAATCC334CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
13JKBNM2_UP_004_F03_21NOV2003_021 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
CN728436.1:144-163
AAGAGCGCAAACGTGAAGCTCAAGGAATCC144CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
13JKBNM2_UP_005_F01_21NOV2003_005 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
CN728528.1:434-453
AAGAGCGCAAACCTGAAGCTCAAGCAATCC434CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
13JKBNM2_UP_006_A07_08DEC2003_063 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
CN728569.1:143-162
AAGAGCGCAAACCTGAAGCTCAAGCAATCC143CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
13JKBNM2_UP_006_C10_08DEC2003_076 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
CN728596.1:434-453
AAGAGCGCAAACCTGAAGCTCAAGCAATCC434CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
92-E022788-021-015-H24-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022H2415Q, mRNA sequence.
CX187874.1:409-428
AAGAGCGCAAACGTGAAGCTCAAGGAATCC409CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
85-E010530-021-002-I22-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022I222Q, mRNA sequence.
CX188581.1:408-427
AAGAGCGCAAACCTGAAGCTCAAGCAATCC408CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
82-E019369-021-010-D21-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022D2110Q, mRNA sequence.
CX188839.1:423-442
AAGAGCGCAAACCTGAAGCTCAAGCAATCC423CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
70-E019426-021-009-P01q-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022P019Q, mRNA sequence.
CX189884.1:417-436
AAGAGCGCAAACCTGAAGCTCAAGCAATCC417CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
64-E022904-021-018-P15-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022P1518Q, mRNA sequence.
CX190410.1:421-440
AAGAGCGCAAACCTGAAGCTCAAGCAATCC421CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
61-E010487-021-001-J16-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022J161Q, mRNA sequence.
CX190787.1:408-427
AAGAGCGCAAACGTGAAGCTCAAGGAATCC408CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
56-E024302-021-023-P14-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022P1423Q, mRNA sequence.
CX191172.1:413-432
AAGAGCGCAAACGTGAAGCTCAAGGAATCC413CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
53-E024302-021-023-J14-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022J1423Q, mRNA sequence.
CX191487.1:400-419
AAGAGCGCAAACCTGAAGCTCAAGCAATCC400CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
50-E023406-021-020-C14-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022C1420Q, mRNA sequence.
CX191795.1:403-422
AAGAGCGCAAACCTGAAGCTCAAGCAATCC403CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
48-E022765-021-014-O11-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022O1114Q, mRNA sequence.
CX191930.1:410-429
AAGAGCGCAAACGTGAAGCTCAAGGAATCC410CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
46-E022903-021-018-K12-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022K1218Q, mRNA sequence.
CX192115.1:410-429
AAGAGCGCAAACGTGAAGCTCAAGGAATCC410CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
TSA: Bombus terrestris a17683.bterqova mRNA sequence.
JL805573.1:426-445
AAGAGCGCAAACCTGAAGCTCAAGCAATCC426CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
Brassica napus genome assembly, chromosome: A01.
HG994355.1:8283651-8283670
AAGAGCGCAAACCTGAAGCTCAAGCAATCC8283651CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
Brassica napus genome assembly, chromosome: C01.
HG994365.1:12972321-12972340
AAGAGCGCAAACGTGAAGCTCAAGGAATCC12972321CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
Brassica rapa genome, scaffold: A01.
LR031571.1:8158393-8158412
AAGAGCGCAAACCTGAAGCTCAAGCAATCC8158393CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:12943207-12943226
AAGAGCGCAAACGTGAAGCTCAAGGAATCC12943207CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:8182624-8182643
AAGAGCGCAAACCTGAAGCTCAAGCAATCC8182624CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG
Brassica napus pollen-specific protein Bnm1 (Bnm1) gene, complete cds.
U86642.1:1531-1550
AAGAGCGCAAACCTGAAGCTCAAGCAATCC1531CCTGACACTGCTCACTACGACGTTAGGTCTTCGACCGACCAGATGAAGCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTGACACTGCTCACTACGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTGACACTGCTCACTACGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.665 | 1.656 | search_plus_done; http://172.18.8.135:50400/match?q=CCTGACACTGCTCACTACGA&k=0&no_gap=0&offset=0&limit=50
1.730 | 0.065 | search_minus_done; http://172.18.8.135:50400/match?q=TCGTAGTGAGCAGTGTCAGG&k=0&no_gap=0&offset=0&limit=0
1.730 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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