GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 00:52:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Silurus aristotelis genome assembly, chromosome: 25.
OX327777.1:4598448-4598467
TATATATTAAACGCAACAAAGAAAACTGTA4598448CCTGGAAGTTATTCAAAGCTGCGCTCCAATGCTTTTTAATGTTTGTATAT
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:39986424-39986443
CACGAGTATGGTTACGAATTGATCTGTTTA39986424CCTGGAAGTTATTCAAAGCTTCAGAGTATTTTGAGTCTAGTCGGTTGTCA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36684644-36684663
CACGAGTATGGTTAAGAATTGATCTGTTTA36684644CCTGGAAGTTATTCAAAGCTTCAGAGTATTTTGAGTCTAGTCGGTTGTCA
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:40284311-40284330
CACGAGTATGGTTACGAATTGATCTGTTTA40284311CCTGGAAGTTATTCAAAGCTTCAGAGTATTTTGAGTCTAGTCGGTTGTCA
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39575551-39575570
CACGAGTATGGTTACGAATTGATCTGTTTA39575551CCTGGAAGTTATTCAAAGCTTCAGAGTATTTTGAGTCTAGTCGGTTGTCA
Malus domestica genome assembly, chromosome: 5.
OU744546.1:39144379-39144398
CACGAGTATGGTTACGAATTGATCTGTTTA39144379CCTGGAAGTTATTCAAAGCTTCAGAGTATTTTGAGTCTAGTCGGTTGTCA
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39605399-39605418
CACGAGTATGGTTAAGAATTGATCTGTTTA39605399CCTGGAAGTTATTCAAAGCTTCAGAGTATTTTGAGTCTAGTCGGTTGTCA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:40440597-40440616
CACGAGTATGGTTACGAATTGATCTGTTTA40440597CCTGGAAGTTATTCAAAGCTTCAGAGTATTTTGAGTCTAGTCGGTTGTCA
Cryptosula pallasiana genome assembly, chromosome: 4.
OX183133.1:5871106-5871125
GCCCTAAATACTTGAAAATCGCTCCCCCAA5871106CCTGGAAGTTATTCAAAGCTGGGCGTTGTGAATTTGTTTTTGTCAAATTG
Dioctria linearis genome assembly, chromosome: 5.
OZ005744.1:100363415-100363434
ACTCTTATTTTGTGCATTTATCAATGACTT100363415CCTGGAAGTTATTCAAAGCTAGAGCATTCAGATGTATGCAGATGACGTCC
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:6617836-6617855
TGACAACCGACTAGACTCAAAATACTCTGA6617836AGCTTTGAATAACTTCCAGGTAAACCGATCAATTCTTAACCATACTCGTG
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:6834777-6834796
TGACAACCGACTAGACTCAAAATACTCTGA6834777AGCTTTGAATAACTTCCAGGTAAACAGATCAATTCTTAACCATACTCGTG
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:6264604-6264623
TGACAACCGACTAGACTCAAAATACTCTGA6264604AGCTTTGAATAACTTCCAGGTAAACCGATCAATTCTTAACCATACTCGTG
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:6773280-6773299
TGACAACCGACTAGACTCAAAATACTCTGA6773280AGCTTTGAATAACTTCCAGGTAAACCGATCAATTCTTAACCATACTCGTG
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:6541357-6541376
TGACAACCGACTAGACTCAAAATACTCTGA6541357AGCTTTGAATAACTTCCAGGTAAACAGATCAATTCTTAACCATACTCGTG
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5341332-5341351
TGACAACCGACTAGACTCAAAATACTCTGA5341332AGCTTTGAATAACTTCCAGGTAAACAGATCAATTCTTAACCATACTCGTG
Primula vulgaris genome assembly, chromosome: 4.
OY987215.1:11770029-11770048
CCATCCTGATGGCCTCAAACCCTTTTCAGC11770029AGCTTTGAATAACTTCCAGGGTTAATTAAGATGTCACGCGTTCAAAACTT
Gonocerus acuteangulatus genome assembly, chromosome: 6.
OX328128.1:55624994-55625013
TTTCCAGTCCGCACAGGTCCACTTCCGGCC55624994AGCTTTGAATAACTTCCAGGGGCTCGAAATTTTTAGAGTTCCATACCCCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTGGAAGTTATTCAAAGCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTGGAAGTTATTCAAAGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.102 | 0.093 | search_plus_done; http://172.18.8.135:50400/match?q=CCTGGAAGTTATTCAAAGCT&k=0&no_gap=0&offset=0&limit=50
0.127 | 0.026 | search_minus_done; http://172.18.8.135:50400/match?q=AGCTTTGAATAACTTCCAGG&k=0&no_gap=0&offset=0&limit=40
0.133 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).