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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 17:54:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Bos taurus genome assembly, chromosome: 16.
LR962746.1:6420318-6420337
GGCCGGGGCTGAGGAATCGCCTCTCCGACC6420318CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTGCTTCACTC
Bos taurus genome assembly, chromosome: X.
LR962768.1:105244059-105244078
GGCCGGGGCTGAGGAACCGCCTCTCCGACC105244059CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTGTTTCACTT
Bos taurus genome assembly, chromosome: 18.
LR962873.1:4731048-4731067
GGACTGGGCGGAGGAACAGTCTCTGAGTAC4731048CCTGGAGGTAAGCTCAACTGCCTTAATCTAGGATAAGATTATTGTTTCAC
Bos gaurus x Bos taurus genome assembly, chromosome: 16.
OX258970.1:8108143-8108162
GGCCGGGGCTGAGGAATCGCCTCTCCGACC8108143CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAAATGCTTCTTCACTC
Bos gaurus x Bos taurus genome assembly, chromosome: 16.
OX258970.1:8519099-8519118
GGCCGAGGCTGAGGAATCGCCTCTCCAACC8519099CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos gaurus x Bos taurus genome assembly, chromosome: 16.
OX258970.1:8523693-8523712
GGCCGAGGCTGAGGAATCGCCTCTCCAACC8523693CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos gaurus x Bos taurus genome assembly, chromosome: 16.
OX258970.1:8528284-8528303
GGCCGAGGCTGAGGAATCGCCTCTCCAACC8528284CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos gaurus x Bos taurus genome assembly, chromosome: 16.
OX258970.1:8532875-8532894
GGCCGAGGCTGAGGAATCGCCTCTCCAACC8532875CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos gaurus x Bos taurus genome assembly, chromosome: 16.
OX258970.1:8537464-8537483
GGCTGGGGCTGAGGAATCACCTCTCCAACC8537464CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACGTAGATCCTGCTTCACTT
Bos gaurus x Bos taurus genome assembly, chromosome: 16.
OX258970.1:8790549-8790568
GGCCGAGGCTGAGGAATCGCCTCTCCGACC8790549CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos gaurus x Bos taurus genome assembly, chromosome: 16.
OX258970.1:8795072-8795091
GGCCGAGGCTGAGGAATCACCTCTCCGACC8795072CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATCCTGCTTCACTT
Bos gaurus x Bos taurus genome assembly, chromosome: 16.
OX258970.1:9075265-9075284
GGCCGAGGCTGAGGAATCGCCTCTCCGACC9075265CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos gaurus x Bos taurus genome assembly, chromosome: 16.
OX258970.1:9077449-9077468
GGCCGAGGCTGAGGAATCGCCTCTCCGACC9077449CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAAATCCTGCTTCACTT
Bos gaurus x Bos taurus genome assembly, chromosome: 16.
OX258970.1:9471473-9471492
GGCCGAGGCTGAGGAATCGCCTCTCCAACC9471473CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos gaurus x Bos taurus genome assembly, chromosome: 16.
OX258970.1:9476067-9476086
GGCCGAGGCTGAGGAATCGCCTCTCCAACC9476067CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos gaurus x Bos taurus genome assembly, chromosome: 16.
OX258970.1:9480653-9480672
GGCTGGGGCTGAGGAATCACCTCTCCAACC9480653CCTGGAGGTAAGCTCAACTGTTTGTGTCTCACGTAGATCCTGCTTCACTT
Bos taurus strain mammals genome assembly, chromosome: 16.
OX344705.1:10879450-10879469
GGCCGGGGCTGAGGAATCGCCTCTCCGACC10879450CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAAATGCTTCTTCACTC
Bos taurus strain mammals genome assembly, chromosome: 16.
OX344705.1:10884038-10884057
GGCTGGGGCTGAGGAATCACCTTTCCGACC10884038CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATCGATCCTGCTTCACTT
Bos taurus strain mammals genome assembly, chromosome: 16.
OX344705.1:11294967-11294986
GGCCGAGGCTGAGGAATCGCCTCTCCAACC11294967CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus strain mammals genome assembly, chromosome: 16.
OX344705.1:11299561-11299580
GGCCGAGGCTGAGGAATCGCCTCTCCAACC11299561CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus strain mammals genome assembly, chromosome: 16.
OX344705.1:11304152-11304171
GGCCGAGGCTGAGGAATCGCCTCTCCAACC11304152CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus strain mammals genome assembly, chromosome: 16.
OX344705.1:11308743-11308762
GGCCGAGGCTGAGGAATCGCCTCTCCAACC11308743CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus strain mammals genome assembly, chromosome: 16.
OX344705.1:11313332-11313351
GGCTGGGGCTGAGGAATCACCTCTCCAACC11313332CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACGTAGATCCTGCTTCACTT
Bos taurus strain mammals genome assembly, chromosome: 16.
OX344705.1:11566419-11566438
GGCCGAGGCTGAGGAATCGCCTCTCCGACC11566419CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus strain mammals genome assembly, chromosome: 16.
OX344705.1:11570942-11570961
GGCCGAGGCTGAGGAATCACCTCTCCGACC11570942CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATCCTGCTTCACTT
Bos taurus strain mammals genome assembly, chromosome: 16.
OX344705.1:11831770-11831789
GGCCAGGGCTGAGGAACCGCCTCTCCGACC11831770CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTGTTTCACTT
Bos taurus strain mammals genome assembly, chromosome: 16.
OX344705.1:11954206-11954225
GGCCGAGGCTGAGGAATCGCCTCTCCGACC11954206CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus strain mammals genome assembly, chromosome: 16.
OX344705.1:11956390-11956409
GGCCGAGGCTGAGGAATCGCCTCTCCGACC11956390CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAAATCCTGCTTCACTT
Bos taurus strain mammals genome assembly, chromosome: 16.
OX344705.1:12350626-12350645
GGCCGAGGCTGAGGAATCGCCTCTCCAACC12350626CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus strain mammals genome assembly, chromosome: 16.
OX344705.1:12355220-12355239
GGCCGAGGCTGAGGAATCGCCTCTCCAACC12355220CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus strain mammals genome assembly, chromosome: 16.
OX344705.1:12359806-12359825
GGCTGGGGCTGAGGAATCACCTCTCCAACC12359806CCTGGAGGTAAGCTCAACTGTTTGTGTCTCACGTAGATCCTGCTTCACTT
Bos taurus genome assembly, chromosome: Bta16.
OY997244.1:7128828-7128847
GGCCGGGGCTGAGGAATCGCCTCTCCGACC7128828CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAAATGCTTCTTCACTC
Bos taurus genome assembly, chromosome: Bta16.
OY997244.1:7133416-7133435
GGCCGGGGCTGAGGAATCGCCTCTCCGACC7133416CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAAATGCTTCTTCACTC
Bos taurus genome assembly, chromosome: Bta16.
OY997244.1:7138004-7138023
GGCTGGGGCTGAGGAATCACCTTTCCGACC7138004CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATCGATCCTGCTTCACTT
Bos taurus genome assembly, chromosome: Bta16.
OY997244.1:7518626-7518645
GGCCGAGGCTGAGGAATCGCCTCTCCAACC7518626CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus genome assembly, chromosome: Bta16.
OY997244.1:7527813-7527832
GGCTGGGGCTGAGGAATCACCTCTCCAACC7527813CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACGTAGATCCTGCTTCACTT
Bos taurus genome assembly, chromosome: Bta16.
OY997244.1:7779043-7779062
GGCTGAGGCTGAGGAATCACCTCTCCGACC7779043CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus genome assembly, chromosome: Bta16.
OY997244.1:8317699-8317718
GGCCAGGGCTGAGGAACCGCCTCTCCGACC8317699CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTGTTTCACTT
Bos taurus genome assembly, chromosome: Bta16.
OY997244.1:8440144-8440163
GGCCGAGGCTGAGGAATCGCCTCTCCGACC8440144CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus genome assembly, chromosome: Bta16.
OY997244.1:8835634-8835653
GGCCGAGGCTGAGGAATCGCCTCTCCAACC8835634CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus genome assembly, chromosome: Bta16.
OY997244.1:8840229-8840248
GGCCGAGGCTGAGGAATCGCCTCTCCAACC8840229CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus genome assembly, chromosome: Bta16.
OY997244.1:8844814-8844833
GGCTGGGGCTGAGGAATCACCTCTCCAACC8844814CCTGGAGGTAAGCTCAACTGTTTGTGTCTCACGTAGATCCTGCTTCACTT
CH240_467H16.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_467H16, genomic survey sequence.
CC559034.1:408-427
GGCCGAGGCTGAGGAATCGCCTCTCCAACC408CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
CH240_134P18.TJ CHORI-240 Bos taurus genomic clone CH240_134P18, genomic survey sequence.
CC770058.1:43-62
GGCTGGGGCTGAGGAATCACCTCTCCAACC43CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACGTAGATCCTGCTTCACTT
BOT01-10H23TR BOT01 Brassica oleracea genomic clone BOT01-10H23, genomic survey sequence.
FI683188.1:598-617
AGCTCTTCATCTGTCGGGTAAAAACGAAAA598CCTGGAGGTAAGCTCAACTGGGCTAACGGATCCTTCTCTCTAATGCCCAT
Bos taurus clone CH240-16P1, WORKING DRAFT SEQUENCE, 14 unordered pieces.
AC159736.2:64746-64765
GGCCAGGGCTGAGGAACCGCCTCTCCGACC64746CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTGTTTCACTT
Bos taurus clone CH240-151H16, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.
AC171927.1:43073-43092
GGCTGGGGCTGAGGAATCACCTCTCCAACC43073CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACGTAGATCCTGCTTCACTT
Bos taurus clone CH240-364L14, WORKING DRAFT SEQUENCE, 13 unordered pieces.
AC220164.1:43567-43586
GGCTGAGGCTGAGGAATCACCTCTCCGACC43567CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus clone CH240-365K7, WORKING DRAFT SEQUENCE, 28 unordered pieces.
AC220190.1:117299-117318
GGCCGGGGCTGAGGAATCGCCTCTCCGACC117299CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAAATGCTTCTTCACTC
Bos taurus clone CH240-365K7, WORKING DRAFT SEQUENCE, 28 unordered pieces.
AC220190.1:121890-121909
GGCTGGGGCTGAGGAATCACCTTTCCGACC121890CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATCGATCCTGCTTCACTT
Bos taurus clone CH240-341N6, WORKING DRAFT SEQUENCE, 10 unordered pieces.
AC220889.1:87062-87081
GGCCGAGGCTGAGGAATCGCCTCTCCAACC87062CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus clone CH240-341N6, WORKING DRAFT SEQUENCE, 10 unordered pieces.
AC220889.1:149623-149642
GGCCAGGGCTGAGGAACCGCCTCTCCGACC149623CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTGTTTCACTT
Bos taurus clone CH240-462O4, WORKING DRAFT SEQUENCE, 22 unordered pieces.
AC223653.1:188183-188202
GGCCGAGGCTGAGGAATCGCCTCTCCAACC188183CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACATAGATGCTTCTTCACTT
Bos taurus clone CH240-462O4, WORKING DRAFT SEQUENCE, 22 unordered pieces.
AC223653.1:192775-192794
GGCTGGGGCTGAGGAATCACCTCTCCAACC192775CCTGGAGGTAAGCTCAACTGTTTGTGTCTCACGTAGATCCTGCTTCACTT
Bos taurus clone CH240-462O4, WORKING DRAFT SEQUENCE, 22 unordered pieces.
AC223653.1:282168-282187
GGCTGGGGCTGAGGAATCACCTCTCCAACC282168CCTGGAGGTAAGCTCAACTGTCTGTGTCTCACGTAGATCCTGCTTCACTT
Bos taurus clone CH240-478H20, WORKING DRAFT SEQUENCE, 18 unordered pieces.
AC224714.1:46024-46043
GGCTGGGGCTGAGGAATCACCTCTCCAACC46024CCTGGAGGTAAGCTCAACTGTTTGTGTCTCACGTAGATCCTGCTTCACTT
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:9546582-9546601
AGCTCTTCATCTGTCGGGTAAAAACGAAAA9546582CCTGGAGGTAAGCTCAACTGGGCTAACGGATCCTTCTCTCTAACTCCCAT
Brassica napus genome assembly, chromosome: A01.
HG994355.1:9721291-9721310
AGCTCTTCATCTGTCGGGTAAAAACGAAAA9721291CCTGGAGGTAAGCTCAACTGGGCTAACGGATCCTTCTCTCTAACTCCCAT
Brassica rapa genome, scaffold: A01.
LR031571.1:9573476-9573495
AGCTCTTCATCTGTCGGGTAAAAACGAAAA9573476CCTGGAGGTAAGCTCAACTGGGCTAACGGATCCTTCTCTCTAACTCCCAT
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:15490357-15490376
AGCTCTTCATCTGTCGGGTAAAAACGAAAA15490357CCTGGAGGTAAGCTCAACTGGGCTAACGGATCCTTCTCTCTAATGCCCAT
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:9597443-9597462
AGCTCTTCATCTGTCGGGTAAAAACGAAAA9597443CCTGGAGGTAAGCTCAACTGGGCTAACGGATCCTTCTCTCTAACTCCCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTGGAGGTAAGCTCAACTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTGGAGGTAAGCTCAACTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.175 | 0.167 | search_plus_done; http://172.18.8.135:50400/match?q=CCTGGAGGTAAGCTCAACTG&k=0&no_gap=0&offset=0&limit=50
0.233 | 0.057 | search_minus_done; http://172.18.8.135:50400/match?q=CAGTTGAGCTTACCTCCAGG&k=0&no_gap=0&offset=0&limit=0
0.233 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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