GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-16 03:24:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Homo sapiens chromosome 5 clone CTC-464B1, complete sequence.
AC008523.5:19554-19573
TGGGATCATACTATACCTACTCTTTCATAA19554CCTGCCCCATGTTTCATTTAAAAGTATGTGAGGCCGCGTTGTGAGGGCAA
Homo sapiens chromosome 5 clone CTB-131H22, complete sequence.
AC010292.8:52152-52171
TGGGATCATACTATACCTACTCTTTCATAA52152CCTGCCCCATGTTTCATTTAAAAGTATGTGAGGCCGCGTTGTGAGGGCAA
JP 2014500723-A/18513: Polycomb-Associated Non-Coding RNAs.
LF211010.1:69210-69229
TGGGATCATACTATACCTACTCTTTCATAA69210CCTGCCCCATGTTTCATTTAAAAGTATGTGAGGCCGCGTTGTGAGGGCAA
JP 2018138019-A/18513: Polycomb-Associated Non-Coding RNAs.
MA446587.1:69210-69229
TGGGATCATACTATACCTACTCTTTCATAA69210CCTGCCCCATGTTTCATTTAAAAGTATGTGAGGCCGCGTTGTGAGGGCAA
Sequence 18513 from patent US 10119144.
MM239354.1:69210-69229
TGGGATCATACTATACCTACTCTTTCATAA69210CCTGCCCCATGTTTCATTTAAAAGTATGTGAGGCCGCGTTGTGAGGGCAA
Trifolium repens isolate ACLI19 chromosome 02_Pall.
CP125839.1:24226435-24226454
TTTTTAGTTACTATTTTTTGAGGGGGGGCG24226435CCTGCCCCATGTTTCATTTATTTAATTTATTATTTGTTTTATTATTTTCA
Trifolium repens isolate ACLI19 chromosome 02_Pall.
CP125839.1:24239670-24239689
TTTTTAGTTACTATTTTTTGAGGGGGGGCG24239670CCTGCCCCATGTTTCATTTATTTAATTTATTATTTGTTTTATTATTTTCA
Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:35038228-35038247
TTTTTAGTTACTATTTTTTGAGGGGGGGCG35038228CCTGCCCCATGTTTCATTTATTTAATTTATTATTTGTTTTATTATTTTCA
Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:35046179-35046198
TTTTTAGTTACTATTTTTTGAGGGGGGGCG35046179CCTGCCCCATGTTTCATTTATTTAATTTATTATTTGTTTTATTATTTTCA
Trifolium repens isolate ACLI19 chromosome 05_0cc.
CP125844.1:26449891-26449910
TTTTTAGTTACTATTTTTTGAGGGGGGGCG26449891CCTGCCCCATGTTTCATTTATTTAATTTATTATTTGTTTTATTATTTTCA
Trifolium repens isolate ACLI19 chromosome 05_0cc.
CP125844.1:26458482-26458501
TTTTTAGTTACTATTTTTTGAGGGGGGGCG26458482CCTGCCCCATGTTTCATTTATTTAATTTATTATTTGTTTTATTATTTTCA
Trifolium repens isolate ACLI19 chromosome 08_Pall.
CP125851.1:27086602-27086621
GTTGGTTACTATTTTTTTGAGGGGGGGGCG27086602CCTGCCCCATGTTTCATTTATTTAATTTATTATTTGTTTTATTATTCTCA
Trifolium repens isolate ACLI19 chromosome 08_Pall.
CP125851.1:27094525-27094544
GTTGGTTACTATTTTTTTGAGGGGGGGGCG27094525CCTGCCCCATGTTTCATTTATTTAATTTATTATTTGTTTTATTATTCTCA
Stratiomys singularior genome assembly, chromosome: 2.
OX940878.1:108352174-108352193
CTCCAGGTCCCTGATTAGGCGCGCGGTCCA108352174CCTGCCCCATGTTTCATTTACCCACCCTTCCTGCCACAGAGCGAGGGTCC
Stratiomys singularior genome assembly, chromosome: 2.
OX940878.1:117312441-117312460
CTCCAGGTCCCTGATTAGGCGCGTGGTCCA117312441CCTGCCCCATGTTTCATTTACCCACTCTTCCTGCCACAGAGCGAGAGTCC
Stratiomys singularior genome assembly, chromosome: 3.
OX940879.1:49882302-49882321
CTCCAGGTCCCTGATTAGGCGCACGGTCCA49882302CCTGCCCCATGTTTCATTTAACCACTCTTCCTGCCACAGAGCGAGAGTCC
Stratiomys singularior genome assembly, chromosome: 3.
OX940879.1:58373734-58373753
CTCCAGGTCCCTGATTAGGCGCGCGGTCCA58373734CCTGCCCCATGTTTCATTTACCCACTCTTCCTGCCACAGAGCGAGAGTTC
Stratiomys singularior genome assembly, chromosome: 4.
OX940880.1:36461846-36461865
TTCCAAGTCCCTGATTAGGCGCGCGGTCCA36461846CCTGCCCCATGTTTCATTTACCCACCCTTACTGCCAGTGAGCAAGAGTCT
Homo sapiens DNA, chromosome 5, nearly complete genome.
AP023465.1:138453135-138453154
TTGCCCTCACAACGCGGCCTCACATACTTT138453135TAAATGAAACATGGGGCAGGTTATGAAAGAGTAGGTATAGTATGATCCCA
Homo sapiens isolate CHM13 chromosome 5.
CP068273.2:140498946-140498965
TTGCCCTCACAACGCGGCCTCACATACTTT140498946TAAATGAAACATGGGGCAGGTTATGAAAGAGTAGGTATAGTATGATCCCA
Homo sapiens isolate NA24385 chromosome 5.
CP139516.1:141727215-141727234
TTGCCCTCACAACGCGGCCTCACATACTTT141727215TAAATGAAACATGGGGCAGGTTATGAAAGAGTAGGTATAGTATGATCCCA
Homo sapiens isolate NA24385 chromosome 5.
CP139539.1:147350758-147350777
TTGCCCTCACAACGCGGCCTCACATACTTT147350758TAAATGAAACATGGGGCAGGTTATGAAAGAGTAGGTATAGTATGATCCCA
Pan troglodytes BAC clone CH251-582O3 from chromosome 5, complete sequence.
AC194540.3:193182-193201
TTGCCCTCACAACGCGGCCTCACATACTTT193182TAAATGAAACATGGGGCAGGTTATGAAAGAGTAGGTATAGTATGATCCCA
Lutra lutra genome assembly, chromosome: 17.
LR738419.1:14805560-14805579
CTTTCTTTCTTCTAACAAAATGTTTCTTCC14805560TAAATGAAACATGGGGCAGGGGGCTGGAGGGATATTAATGACTTTACCAC
Meles meles genome assembly, chromosome: 19.
OV277460.1:14753367-14753386
CTTCCTTTCTTCTAACAAAATGTTTCTTCC14753367TAAATGAAACATGGGGCAGGGGGCTGGAGGGATATTAATGACTTTACCAC
Martes martes genome assembly, chromosome: 17.
OY734080.1:15255206-15255225
CTTTCTTTCTTCTAACAAAATGTTTCTTCC15255206TAAATGAAACATGGGGCAGGGGGCTGGAGGGATATTAATGACTTTACCAC
Eukaryotic synthetic construct chromosome 5.
CP034504.1:139343427-139343446
TTGCCCTCACAACGCGGCCTCACATACTTT139343427TAAATGAAACATGGGGCAGGTTATGAAAGAGTAGGTATAGTATGATCCCA
Eukaryotic synthetic construct chromosome 5.
CP034529.1:139343427-139343446
TTGCCCTCACAACGCGGCCTCACATACTTT139343427TAAATGAAACATGGGGCAGGTTATGAAAGAGTAGGTATAGTATGATCCCA
Trifolium repens mRNA, clone: WCC11i08_021, unspecified EST.
FY458002.1:610-629
TGAAAATAATAAAACAAATAATAAATTAAA610TAAATGAAACATGGGGCAGGCGTCCCCCCTCAAAAAATAGTAACTAAAAA
Trifolium repens mRNA, clone: WCC20m17, unspecified EST.
FY461233.1:721-740
TAATGAGAATAATAAAACAAATAAATTAAA721TAAATGAAACATGGGGCAGGCGCCCCCCCCCTCAAAAAAATAGTAACCAA
Trifolium repens mRNA, clone: WCC25b16_050, unspecified EST.
FY462771.1:564-583
TGAAAATAATAAAACAAATAATAAATTAAA564TAAATGAAACATGGGGCAGGCGCCCCCCCTTCAAAAATAGTAACTAAAAA
Trifolium repens mRNA, clone: WCC31f21, unspecified EST.
FY464987.1:725-744
TGAGAATAATAAAACAAATAATAAATTAAA725TAAATGAAACATGGGGCAGGCGCCCCCCCCCTCAAAAAAATAGTAACCAA
Trifolium repens mRNA, clone: WCC39j08_022, unspecified EST.
FY467946.1:609-628
TGAAAATAATAAAACAAATAATAAACTAAA609TAAATGAAACATGGGGCAGGCGCCTCCCCTCAAAAAATAGTAACTAA
Homo sapiens clone RP11-13O18, WORKING DRAFT SEQUENCE, 10 unordered pieces.
AC011589.3:107624-107643
TTGCCCTCACAACGCGGCCTCACATACTTT107624TAAATGAAACATGGGGCAGGTTATGAAAGAGTAGGTATAGTATGATCCCA
Homo sapiens chromosome 12 clone RP11-817D14 map 12, WORKING DRAFT SEQUENCE, 38 unordered pieces.
AC026272.2:161548-161567
TTGCCCTCACAACGCGGCCTCACATACTTT161548TAAATGAAACATGGGGCAGGTTATGAAAGAGTAGGTATAGTATGATCCCA
Monodelphis domestica clone VMRC18-308D15, WORKING DRAFT SEQUENCE, 11 ordered pieces.
AC225285.2:128576-128595
TTAGACTATGTAGACCAGACAAAAATGAAA128576TAAATGAAACATGGGGCAGGGTCGACAGGGAAGAACCACTTCATCTTCAT
Trifolium repens isolate ACLI19 chromosome 08_0cc.
CP125850.1:21230964-21230983
TGAAAATAATAAAACAAATAATAAATTAAA21230964TAAATGAAACATGGGGCAGGCGCCCCCCCTCAAAAAATAGTAACTAAAAA
Trifolium repens isolate ACLI19 chromosome 08_0cc.
CP125850.1:21241491-21241510
TGAAAATAATAAAACAAATAATAAATTAAA21241491TAAATGAAACATGGGGCAGGCGCCCCCCCTCAAAAAATAGTAACTAAAAA
Stratiomys singularior genome assembly, chromosome: 1.
OX940877.1:27566856-27566875
GGACTATCGCTCTGTGGCGGGAAGAGTGGG27566856TAAATGAAACATGGGGCAGGTGGATCGCGCACCTAATCAGGGACCTGGAG
Stratiomys singularior genome assembly, chromosome: 1.
OX940877.1:66083668-66083687
GAACTCTCACTCTGTGGCAGGAAGGGTGGG66083668TAAATGAAACATGGGGCAGGTGGACCGCGCGCCTAATCAGGGACCTGAAG
Stratiomys singularior genome assembly, chromosome: 1.
OX940877.1:75942816-75942835
GGACTCTTGTTCTGTGGGAGGAAGGGTGTG75942816TAAATGAAACATGGGGCAGGTGGACCGCGTGTCTATTCAGGGACCTGGAG
Stratiomys singularior genome assembly, chromosome: 1.
OX940877.1:95438999-95439018
GGGCTCTCGCTCTGTGGCAGGAAGAGTGGG95438999TAAATGAAACATGGGGCAGGTGGACCGCGCGCCCACTCGAGGACCTGGAG
Stratiomys singularior genome assembly, chromosome: 1.
OX940877.1:141650055-141650074
GGACTCTCGCTCTGTGGCAGGACGGGTGGG141650055TAAATGAAACATGGGGCAGGTGCACCGCGCGCCTAATCAGGGACCTGGAG
Stratiomys singularior genome assembly, chromosome: 3.
OX940879.1:58430162-58430181
TACCGGAAGCTCTGTGGCAGGAAGAGTTGG58430162TAAATGAAACATGGGGCAGGTGGACCGCGCGCCTTATCAGGAACCTGGAC
Stratiomys singularior genome assembly, chromosome: 5.
OX940881.1:42347151-42347170
GGGCTCTTATTCTGTCGCAGGAAGGATGCG42347151TAAATGAAACATGGGGCAGGTGGACCGCGTGTCTAATCAGGGACTGGAGC
Stratiomys singularior genome assembly, chromosome: 5.
OX940881.1:42632925-42632944
GGACTCTTGCTCTTTGGCAGAAAGGGTGGG42632925TAAATGAAACATGGGGCAGGTGAACCGAGCGCTTAATCAGGGACCTGAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTGcccCATGTTTCATTTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTGcccCATGTTTCATTTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.240 | 0.231 | search_plus_done; http://172.18.8.135:50400/match?q=CCTGCCCCATGTTTCATTTA&k=0&no_gap=0&offset=0&limit=50
0.635 | 0.395 | search_minus_done; http://172.18.8.135:50400/match?q=TAAATGAAACATGGGGCAGG&k=0&no_gap=0&offset=0&limit=32
0.653 | 0.018 | cgi_end;

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