GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:37:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EG-E11_008_E12 embsomSSHE1, Early somatic embryos (SSH) BAP/no BAP Elaeis guineensis cDNA clone EG-E11_008_E12, mRNA sequence.
JK669210.1:356-375
ATCTCGGTTCAAGATCTTCACCAAATATGC356CCTTGGTTGAGACTGCCATTGCAGCACAGCCCCCGCGTACTTTGGGGGCG
EG-A11_009_G02 Oil palm abnormal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN600307.1:57-76
CTTCTTGCTCCTTCTCCTTTGCTGTGCTGC57AATGGCAGTCTCAACCAAGGGCATATTTGGTGAAGATCTTGAACCGAGAT
OPMF01376 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 5-E01-T3.seq, mRNA sequence.
EL685136.1:63-82
CTTCTTGCTCCTTCTCCTTTGCTGTGCTGC63AATGGCAGTCTCAACCAAGGGCATATTTGGTGAAGATCTTGAACCGAGAT
OPSC00999 Elaeis guineensis Suspension cell cultures Elaeis guineensis cDNA clone 195-E8-T3.seq, mRNA sequence.
EL689225.1:63-82
CTTCTTGCTCCTTCTCCTTTGCTGTGCTGC63AATGGCAGTCTCAACCAAGGGCATATTTGGTGAAGATCTTGAACCGAGAT
pOP-EO02188_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO02188 5', mRNA sequence.
EY409903.1:69-88
CTTCTTGCTCCTTCTCCTTTGCTGTGCTGC69AATGGCAGTCTCAACCAAGGGCATATTTGGTGAAGATCTTGAACCGAGAT
Elaeis guineensis EST, clone (6lib)_isotig39548.
LM635403.1:56-75
CTTCTTGCTCCTTCTCCTTTGCTGTGCTGC56AATGGCAGTCTCAACCAAGGGCATATTTGGTGAAGATCTTGAACCGAGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTTGGTTGAGACTGCCATT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTTGGTTGAGACTGCCATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.237 | 0.229 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTGGTTGAGACTGCCATT&k=0&no_gap=0&offset=0&limit=50
0.696 | 0.458 | search_minus_done; http://172.18.8.135:50400/match?q=AATGGCAGTCTCAACCAAGG&k=0&no_gap=0&offset=0&limit=49
0.699 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).