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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 03:22:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

OL1750F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1750, mRNA sequence.
EH415224.1:168-189
TCTCTTCTAGCTCTGCTTCTCTCTCCACCG168CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0190334 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV092837.1:417-438
TCTCTTCTAGCTCCGCTTTTTTCTCCACCG417CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0191420 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV093474.1:406-427
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG406CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0191623 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV093622.1:266-287
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG266CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0191923 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV093922.1:268-289
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG268CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0114998 Brassica napus Senescent leaves Brassica napus cDNA, mRNA sequence.
EV109686.1:267-288
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG267CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0116050 Brassica napus Senescent leaves Brassica napus cDNA, mRNA sequence.
EV110738.1:269-290
CTGCTTCTAGCTCCGCTTCTCTCTCCACCG269CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0129603 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV124291.1:343-364
TCTCTTCTAGCTCTGCTTCTCTCTCCACCG343CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0157309 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV173829.1:481-502
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG481CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0200139 Brassica napus Undamaged cotyledons Brassica napus cDNA, mRNA sequence.
EV185983.1:267-288
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG267CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0200199 Brassica napus Undamaged cotyledons Brassica napus cDNA, mRNA sequence.
EV186021.1:260-281
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG260CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0202323 Brassica napus Undamaged cotyledons Brassica napus cDNA, mRNA sequence.
EV188115.1:277-298
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG277CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0087654 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV190173.1:276-297
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG276CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0089265 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV191784.1:347-368
TCTCTTCTAGCTCTGCTTCTCTCTCCACCG347CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0091894 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV194408.1:271-292
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG271CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0092466 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV194980.1:323-344
TCTCTTCTAGCTCTGCTTCTCTCTCCACCG323CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0097818 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV196665.1:301-322
TCTCTTCTAGCTCTGCTTCTCTCTCCACCG301CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0100084 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV198931.1:273-294
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG273CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0101330 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV200177.1:240-261
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG240CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0102016 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV200863.1:324-345
TCTCTTCTAGCTCTGCTTCTCTCTCCACCG324CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0102490 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV201337.1:300-321
TCTCTTCTAGCTCTGCTTCTCTCTCCACCG300CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0172263 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV204577.1:306-327
TCTCTTCTAGCTCTGCTTCTCTCTCCACCG306CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0175094 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV206387.1:316-337
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG316CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0175607 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV206900.1:272-293
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG272CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0176325 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV207618.1:258-279
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG258CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0178076 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV208832.1:316-337
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG316CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0186337 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV214516.1:361-382
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG361CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0186448 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV214627.1:360-381
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG360CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0187063 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV214965.1:381-402
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG381CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
RR1BF20JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EV532809.1:291-312
TCTCTTCTAGCTCTGCTTCTCTCTCTATCG291CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAATAATAATTGTAGTCGCCAGC
RS2BB17JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW729834.1:274-295
TCTCTTCTAGCTCTGCTTCTCTCTCTATCG274CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAATAATAATTGTAGTCGCCAGC
BR041809 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-027A03 5', mRNA sequence.
EX057165.1:285-306
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG285CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCG
BR106643 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-12H10 5', mRNA sequence.
EX122813.1:307-328
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG307CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCGGC
BR112850 ovule and silique cDNA library KHOS Brassica rapa subsp. pekinensis cDNA clone KHOS-14F04 3', mRNA sequence.
EX129020.1:307-328
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG307CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCGGC
RR2BP63JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX758784.1:300-321
TCTCTTCTAGCTCTGCTTCTCTCTCTACCG300CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAATAATAATTGTAGTCGCCAGC
RR4C820JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EX775846.1:385-406
TCTCTTCTAGCTCTGCTTCTCTCTCTACCG385CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAATAATAATTGTAGTCTCCTGC
RR4D968JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY917985.1:293-314
TCTCTTCTAGCTCTGCTTCTCTCTCTACCG293CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAATAATAATTGTAGTCTCCTGC
RS2EZ73JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD573436.1:367-388
TCTCTTCTAGCTATGCTTCTCTCTCTACCG367CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAATAATAATTGTAGTCGCCAGC
RR1FZ73JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD958760.1:293-314
TCTCTTCTAGCTCTGCTTCTCTCTCTACCG293CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAATAATAATTGTAGTCGCCAGC
Raphanus sativus mRNA, clone: RSCF12L16, 5' end sequence.
FY431050.1:299-320
TCTCTTCTAGCTCTGCTTCTCTCTCTACCG299CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAATAATAATTGTAGTCGCCAGC
0238697 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO916649.1:262-283
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG262CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCGGC
0269254 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO936850.1:258-279
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG258CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCGGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1264.
FX727335.1:302-323
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG302CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
TSA: Raphanus sativus RS24346 mRNA sequence.
JT808893.1:368-389
TCTCTTCTAGCTCTGCTTCTCTCTCTATCG368CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAATAATAATTGTAGTCGCCAGC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02 clone KBrH105C12, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC234766.1:17772-17793
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG17772CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATACTGCCCCAACAGAGA
Raphanus sativus cultivar WK10039 clone RsH059P02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC255136.1:66957-66978
TCTCTTCTAGCTCTGCTTCTCTCTCTACCG66957CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAATAATACTGCCAGAGAGAATC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH080C09, complete sequence.
AC166741.1:50896-50917
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG50896CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATACTGCCCCAACAGAGA
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:38224736-38224757
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG38224736CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATACTGCCCCAACAGAGA
Brassica napus genome assembly, chromosome: A02.
HG994356.1:32798882-32798903
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG32798882CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATACTGCCCCAACAGAGA
Brassica napus genome assembly, chromosome: C02.
HG994366.1:61284444-61284465
TCTCTTCTAGCTCTGCTTCTCTCTCCACCG61284444CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATACTGCCCCAACATAGA
Brassica rapa genome, scaffold: A02.
LR031573.1:30955442-30955463
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG30955442CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATACTGCCCCAACAGAGA
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:62764926-62764947
TCTCTTCTAGCTCTGCTTCTCTCTCCACCG62764926CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATACTGCCCCAACATAGA
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:31892542-31892563
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG31892542CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATACTGCCCCAACAGAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTTTGCTCTAGCTTCCAGGTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTTTGCTCTAGCTTCCAGGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
3.016 | 3.007 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTTGCTCTAGCTTCCAGGTT&k=0&no_gap=0&offset=0&limit=50
3.064 | 0.047 | search_minus_done; http://172.18.8.135:50400/match?q=AACCTGGAAGCTAGAGCAAAGG&k=0&no_gap=0&offset=0&limit=0
3.064 | 0.000 | cgi_end;

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