GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 03:03:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:6264698-6264719
GTCTTTGTGTGTCTTACTACTTCGTTTAGA6264698CGAACTGTGAACTAACATATCATCTATGGAGTAATAACTAATAACTTTACAC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:6773374-6773395
GTCTTTGTGTGTCTTACTACTTCGTTTAGA6773374CGAACTGTGAACTAACATATCATCTATGGAGTAATAACTAATAACTTTACAC
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5341426-5341447
GTCTGTGTGTGTCTTACTACTTCGTTTAGA5341426CGAACTGTGAACTAACATATCATCTATGGAGTAATATTAATCTACCATTGTC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:39986328-39986349
GTGTAAAGTTATTAGTTATTACTCCATAGA39986328TGATATGTTAGTTCACAGTTCGTCTAAACGAAGTAGTAAGACACACACAGAC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36684548-36684569
GTGTAAAGTTATTAGTTATTACTCCATAGA36684548TGATATGTTAGTTCACAGTTCGTCTAAACGAAGTAGTAAGACACACACAGAC
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:40284215-40284236
GTGTAAAGTTATTAGTTATTACTCCATAGA40284215TGATATGTTAGTTCACAGTTCGTCTAAACGAAGTAGTAAGACACACACAGAC
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39575455-39575476
GTGTAAAGTTATTAGTTATTACTCCATAGA39575455TGATATGTTAGTTCACAGTTCGTCTAAACGAAGTAGTAAGACACACACAGAC
Malus domestica genome assembly, chromosome: 5.
OU744546.1:39144283-39144304
GTGTAAAGTTATTAGTTATTACTCCATAGA39144283TGATATGTTAGTTCACAGTTCGTCTAAACGAAGTAGTAAGACACACACAGAC
Malus domestica genome assembly, chromosome: 5.
OU744995.1:40440501-40440522
GTGTAAAGTTATTAGTTATTACTCCATAGA40440501TGATATGTTAGTTCACAGTTCGTCTAAACGAAGTAGTAAGACACACACAGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGAACTGTGAACTAACATATCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGAACTGTGAACTAACATATCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.094 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=CGAACTGTGAACTAACATATCA&k=0&no_gap=0&offset=0&limit=50
0.112 | 0.018 | search_minus_done; http://172.18.8.135:50400/match?q=TGATATGTTAGTTCACAGTTCG&k=0&no_gap=0&offset=0&limit=47
0.116 | 0.004 | cgi_end;

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